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BaseInfo

ncRNA ID	novel_zma_miR299
Species	Zea mays
Class	miRNA
Genome position	Chr5:195905790-195905870 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089699
Length	24
Mature sequence(if miRNA)	58 - GGAUUGAGUGGGAUUGGAUAGGUU - 81
Stem-loop(if miRNA)	--      AG          --U         UCUCAACUA   GGAUUG  UGGGAUUGGA   AGGUUUAAA         A   ||||||  ||||||||||   |||||||||         G   CUUAAC  AUUCUAACCU   UUUAAAUUU         U UA      CU          UUU         UUCCCAAAC
Stem-loop sequence	GGAUUGAGUGGGAUUGGAUAGGUUUAAAUCUCAACUAAGUCAAACCCUUUUUAAAUUUUUUUCCAAUCUUAUCCAAUUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539703.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||||||||||||||=|||||||| targets:56   AACCUAUCCAAUCCCGCUCAAUCC   79 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:5800   AACCCAUCCAAUCCCACUCAAUCC   5823 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1225   AACCCAUCCAAUCCCACUCAAUCC   1248 Target Full Sequence	0.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1195   AACCCAUCCAAUCCCACUCAAUCC   1218 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1195   AACCCAUCCAAUCCCACUCAAUCC   1218 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1077   AACCCAUCCAAUCCCACUCAAUCC   1100 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1954   AACCCAUCCAAUCCCACUCAAUCC   1977 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1954   AACCCAUCCAAUCCCACUCAAUCC   1977 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:2496   AACCCAUCCAAUCCCACUCAAUCC   2519 Target Full Sequence	0.0	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1811   AACCCAUCCAAUCCCACUCAAUCC   1834 Target Full Sequence	0.0	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1811   AACCCAUCCAAUCCCACUCAAUCC   1834 Target Full Sequence	0.0	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1526   AACCCAUCCAAUCCCACUCAAUCC   1549 Target Full Sequence	0.0	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1526   AACCCAUCCAAUCCCACUCAAUCC   1549 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1462   AACCCAUCCAAUCCCACUCAAUCC   1485 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:1462   AACCCAUCCAAUCCCACUCAAUCC   1485 Target Full Sequence	0.0	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:524   AACCCAUCCAAUCCCACUCAAUCC   547 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:172   AACCCAUCCAAUCCCACUCAAUCC   195 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:870   AACCCAUCCAAUCCCACUCAAUCC   893 Target Full Sequence	0.0	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:741   AACCCAUCCAAUCCCACUCAAUCC   764 Target Full Sequence	0.0	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCCAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCAAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCAAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCCAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCCAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCCAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCCAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCAAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:94   AACCCAUCCAAUCCCACUCAAUCC   117 Target Full Sequence	0.0	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:85   AACCCAUCCAAUCCCACUCAAUCC   108 Target Full Sequence	0.0	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:85   AACCCAUCCAAUCCCACUCAAUCC   108 Target Full Sequence	0.0	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:85   AACCCAUCCAAUCCCACUCAAUCC   108 Target Full Sequence	0.0	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:75   AACCCAUCCAAUCCCACUCAAUCC   98 Target Full Sequence	0.0	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:75   AACCCAUCCAAUCCCACUCAAUCC   98 Target Full Sequence	0.0	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
HI405889.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||||||||| targets:75   AACCCAUCCAAUCCCACUCAAUCC   98 Target Full Sequence	0.0	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*|||||||||=||||||||| targets:3749   AACCCAUCCAAUCCUACUCAAUCC   3772 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*|||||||||=||||||||| targets:3744   AACCCAUCCAAUCCUACUCAAUCC   3767 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*|||||||||=||||||||| targets:3462   AACCCAUCCAAUCCUACUCAAUCC   3485 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*|||||||||=||||||||| targets:3476   AACCCAUCCAAUCCUACUCAAUCC   3499 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:2900   AACCCAUCCAAUCCCGCUCAAUCC   2923 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:2796   AACCCAUCCAAUCCCGCUCAAUCC   2819 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:2344   AACCCAUCCAAUCUCACUCAAUCC   2367 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:2284   AACCCAUCCAAUCUCACUCAAUCC   2307 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:2277   AACCCAUCCAAUCUCACUCAAUCC   2300 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:2149   AACCCAUCCAAUCUCACUCAAUCC   2172 Target Full Sequence	1.5	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:2148   AACCCAUCCAAUCUCACUCAAUCC   2171 Target Full Sequence	1.5	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||||||||||||| targets:2207   AACUCAUCCAAUCCCACUCAAUCC   2230 Target Full Sequence	0.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:2136   AACCCAUCCAAUCCCGCUCAAUCC   2159 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:2076   AACCCAUCCAAUCUCACUCAAUCC   2099 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:2025   AACCCAUCCAAUCCCGCUCAAUCC   2048 Target Full Sequence	1.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:2043   AACCCAUCCAAUCCCGCUCAAUCC   2066 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:1948   AACCAAUCCAAUCCCGCUCAAUCC   1971 Target Full Sequence	1.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:1882   AACCAAUCCAAUCCCGCUCAAUCC   1905 Target Full Sequence	1.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:1615   AACCCAUCCAAUCCCGCUCAAUCC   1638 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*|||||||||=||||||||| targets:1009   AACCCAUCCAAUCCUACUCAAUCC   1032 Target Full Sequence	1.5	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:1124   AACCCAUCCAAUCCCGCUCAAUCC   1147 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||=|||||||| targets:1124   AACCCAUCCAAUCCCGCUCAAUCC   1147 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667120.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||||||*|||||||||||||=| targets:944   AACCUAUCAAAUCCCACUCAAUUC   967 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:451   AACCCAUCCAAUCUCACUCAAUCC   474 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*|||||||||=||||||||| targets:231   AACCCAUCCAAUCCUACUCAAUCC   254 Target Full Sequence	1.5	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||||||||||||| targets:116   AACUCAUCCAAUCCCACUCAAUCC   139 Target Full Sequence	0.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||*|||||||||=|||||||||| targets:87   AACAUAUCCAAUCUCACUCAAUCC   110 Target Full Sequence	1.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||*|||||||||=|||||||||| targets:87   AACAUAUCCAAUCUCACUCAAUCC   110 Target Full Sequence	1.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||*|||||||||=|||||||||| targets:87   AACAUAUCCAAUCUCACUCAAUCC   110 Target Full Sequence	1.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||||||||||||| targets:76   AACUCAUCCAAUCCCACUCAAUCC   99 Target Full Sequence	0.0	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||||||||||||| targets:76   AACUCAUCCAAUCCCACUCAAUCC   99 Target Full Sequence	0.0	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||||||||||||| targets:76   AACUCAUCCAAUCCCACUCAAUCC   99 Target Full Sequence	0.0	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:75   AACCCAUCCAAUCUCACUCAAUCC   98 Target Full Sequence	1.5	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:75   AACCCAUCCAAUCUCACUCAAUCC   98 Target Full Sequence	1.5	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||=|||||||||| targets:75   AACCCAUCCAAUCUCACUCAAUCC   98 Target Full Sequence	1.5	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||||||||||||=||||| targets:7256   AACUCAUCCAAUCCCACUUAAUCC   7279 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||||||||||||=||||| targets:7245   AACUCAUCCAAUCCCACUUAAUCC   7268 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||||||||||||=||||| targets:7141   AACUCAUCCAAUCCCACUUAAUCC   7164 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||=|||||||||||||||| targets:1411   AACUCAUUCAAUCCCACUCAAUCC   1434 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||=|||||||||||||||| targets:1120   AACUCAUUCAAUCCCACUCAAUCC   1143 Target Full Sequence	1.0	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||=|||||||||||||||| targets:1120   AACUCAUUCAAUCCCACUCAAUCC   1143 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||=|||||||||| targets:242   AACUCAUCCAAUCUCACUCAAUCC   265 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||=|||||||||||||||| targets:87   AACUCAUUCAAUCCCACUCAAUCC   110 Target Full Sequence	1.0	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||||||||||||=||||| targets:94   AACUCAUCCAAUCCCACUUAAUCC   117 Target Full Sequence	1.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||||||||||||=||||| targets:94   AACUCAUCCAAUCCCACUUAAUCC   117 Target Full Sequence	1.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||||||||||||=||||| targets:94   AACUCAUCCAAUCCCACUUAAUCC   117 Target Full Sequence	1.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||=|||||||||||||||| targets:94   AACUCAUUCAAUCCCACUCAAUCC   117 Target Full Sequence	1.0	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||=|||||||||||||||| targets:94   AACUCAUUCAAUCCCACUCAAUCC   117 Target Full Sequence	1.0	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||=|||||||||||||||| targets:94   AACUCAUUCAAUCCCACUCAAUCC   117 Target Full Sequence	1.0	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||=|||||||||| targets:83   AACUCAUCCAAUCUCACUCAAUCC   106 Target Full Sequence	1.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||=|||||||||| targets:83   AACUCAUCCAAUCUCACUCAAUCC   106 Target Full Sequence	1.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||=|||||||||| targets:83   AACUCAUCCAAUCUCACUCAAUCC   106 Target Full Sequence	1.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||=|||||||||| targets:12   AACUCAUCCAAUCUCACUCAAUCC   35 Target Full Sequence	1.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||=||||=|||||||||| targets:3434   AACUCAUCUAAUCUCACUCAAUCC   3457 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||=||||=|||||||||| targets:3403   AACUCAUCUAAUCUCACUCAAUCC   3426 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||=||||=|||||||||| targets:3390   AACUCAUCUAAUCUCACUCAAUCC   3413 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||*|||||| targets:1823   AACCCAUCCAAUCCCACCCAAUCC   1846 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||*|||||| targets:1807   AACCCAUCCAAUCCCACCCAAUCC   1830 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ064093.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*|*||||||||||||||||| targets:184   AACCCACCCAAUCCCACUCAAUCC   207 Target Full Sequence	1.0	TSA: Zea mays contig65216, mRNA sequence	NA	coding protein	psRNATarget
LQ241402.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||*|||||| targets:70   AACCCAUCCAAUCCCACCCAAUCC   93 Target Full Sequence	1.5	Sequence 7397 from Patent EP2985353	NA	coding protein	psRNATarget
HI409272.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||*|||||| targets:70   AACCCAUCCAAUCCCACCCAAUCC   93 Target Full Sequence	1.5	Sequence 7397 from Patent EP2074227	NA	coding protein	psRNATarget
JB169733.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*||||||||||||*|||||| targets:70   AACCCAUCCAAUCCCACCCAAUCC   93 Target Full Sequence	1.5	Sequence 7397 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||**|||=||||||||||||||| targets:2078   AACACAUCUAAUCCCACUCAAUCC   2101 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552750.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||||*|||=||||||*|||||||| targets:138   AACCCAUCUAAUCCCUCUCAAUCC   161 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*||||||||||||*|||||| targets:181   AACUCAUCCAAUCCCACACAAUCC   204 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||**|||=||||||||||||||| targets:1361   AACACAUCUAAUCCCACUCAAUCC   1384 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
BT069961.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||**|||||||||||||||||=| targets:106   AACACAUCCAAUCCCACUCAAUUC   129 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds	NA	coding protein	psRNATarget
JB169468.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|*||||||||||||||||| targets:69   AACUCACCCAAUCCCACUCAAUCC   92 Target Full Sequence	1.0	Sequence 7132 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241137.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|*||||||||||||||||| targets:69   AACUCACCCAAUCCCACUCAAUCC   92 Target Full Sequence	1.0	Sequence 7132 from Patent EP2985353	NA	coding protein	psRNATarget
HI409007.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|*||||||||||||||||| targets:69   AACUCACCCAAUCCCACUCAAUCC   92 Target Full Sequence	1.0	Sequence 7132 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   ||=|*|*=|||||||||||||||| targets:4053   AAUCGACUCAAUCCCACUCAAUCC   4076 Target Full Sequence	2.0	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT066441.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||=*|||=||||||||*|||||| targets:1523   AACUCAUCUAAUCCCACCCAAUCC   1546 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052459.1	ncRNA:24   UUGGAUAGGUUAGGGUGAGUUAGG   1   |||**||||=||||=||||||||| targets:20   AACACAUCCGAUCCUACUCAAUCC   43 Target Full Sequence	2.5	TSA: Zea mays contig53580, mRNA sequence	NA	coding protein	psRNATarget