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BaseInfo

ncRNA ID	novel_zma_miR298
Species	Zea mays
Class	miRNA
Genome position	Chr5:197881854-197881927 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089715;SRR2089707
Length	22
Mature sequence(if miRNA)	1 - UGGAGAGAUAGACCGCGCUGAC - 22
Stem-loop(if miRNA)	--A     A    --G        --    UU      - U    AGUGC GGUC   UUCUCCAC  GUGC  CGUGCG C G    ||||| ||||   ||||||||  ||||  |||||| |    UCGCG CCAG   GAGAGGUG  UACG  GCACGU G A CAG     -    AUA        GU    --      U U
Stem-loop sequence	AAGUGCAGGUCGUUCUCCACGUGCUUCGUGCGCUGAUGUUGCACGGCAUUGGUGGAGAGAUAGACCGCGCUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551266.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   *||||||||||||||||||||| targets:1208   AUCAGCGCGGUCUAUCUCUCCA   1229 Target Full Sequence	0.0	PREDICTED: Zea mays RNA polymerase II transcription factor B subunit 4 (LOC100192494), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551264.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   *||||||||||||||||||||| targets:1217   AUCAGCGCGGUCUAUCUCUCCA   1238 Target Full Sequence	0.0	PREDICTED: Zea mays RNA polymerase II transcription factor B subunit 4 (LOC100192494), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544709.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   ||||||||||||||*||||||| targets:535   GUCAGCGCGGUCUACCUCUCCA   556 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109942604), mRNA	NA	coding protein	psRNATarget
XM_020540018.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   ||||||||||||||*||||||| targets:892   GUCAGCGCGGUCUACCUCUCCA   913 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940483), mRNA	NA	coding protein	psRNATarget
XM_020542833.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   ||||||||*||||||||||=|| targets:424   GUCAGCGCCGUCUAUCUCUUCA   445 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109941662), mRNA	NA	coding protein	psRNATarget
XM_020539998.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   |||||||=||||||*||||||| targets:532   GUCAGCGUGGUCUACCUCUCCA   553 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940466), mRNA	NA	coding protein	psRNATarget
XM_008653740.2	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   |||||=||||||||*||||||| targets:1388   GUCAGUGCGGUCUACCUCUCCA   1409 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103631899 (LOC103631899), mRNA	NA	coding protein	psRNATarget
KJ727486.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   ***||=|||||||||||*|||| targets:587   AGGAGUGCGGUCUAUCUAUCCA   608 Target Full Sequence	2.5	Zea mays clone pUT5345 mTERF transcription factor (mTRF5) mRNA, partial cds	NA	coding protein	psRNATarget
BT042904.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   ***||=|||||||||||*|||| targets:652   AGGAGUGCGGUCUAUCUAUCCA   673 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0062C22 mRNA, complete cds	NA	coding protein	psRNATarget
EU969302.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   ***||=|||||||||||*|||| targets:633   AGGAGUGCGGUCUAUCUAUCCA   654 Target Full Sequence	2.5	Zea mays clone 328234 mTERF family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157577.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   ***||=|||||||||||*|||| targets:633   AGGAGUGCGGUCUAUCUAUCCA   654 Target Full Sequence	2.5	Zea mays mTERF family protein (mTRF5), mRNA	NA	coding protein	psRNATarget
BT087791.1	ncRNA:22   CAGUCGCGCCAGAUAGAGAGGU   1   ***||=|||||||||||*|||| targets:581   AGGAGUGCGGUCUAUCUAUCCA   602 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0204F19 mRNA, complete cds	NA	coding protein	psRNATarget