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BaseInfo

ncRNA ID novel_zma_miR297
Species Zea mays
Class miRNA
Genome position Chr5:216483783-216483909 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089715;SRR4237223;SRR1997865;SRR4237227;SRR5105959;SRR5451003;SRR5451004;SRR1997866
Length 21
Mature sequence(if miRNA) 1 - UCGGACCAGGCUUCAAUCCCU - 21
Stem-loop(if miRNA) --      UU      CU  GG            GAU    UCAUAACAUAU   U  GU     UA   U
  GGAUUG  GUCUGG  CG  GUCUCCGGUCGA   CGAU           ACG AC  GCUUC  GCC U
  ||||||  ||||||  ||  ||||||||||||   ||||           ||| ||  |||||  ||| G
  CCUAAC  CGGACC  GC  UAGAGGCCAGCU   GCUG           UGC UG  CGAGG  CGG C
UC      UU      AG  UU            ---    ----------U   -  AU     --   C
Stem-loop sequence GGAUUGUUGUCUGGCUCGGGGUCUCCGGUCGAGAUCGAUUCAUAACAUAUACGUACGUGCUUCUAGCCUUGCCGGCGGAGCUAGUCGUUGUCGUCGACCGGAGAUUUCGGACCAGGCUUCAAUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001153310.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:1599   AGGGAUUGAAGCCUGGUCCGA   1619

0.0 Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA NA coding protein psRNATarget
NM_001153310.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =*|||*|||=|||||||||||
targets:1867   GAGGAAUGAGGCCUGGUCCGA   1887

2.5 Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA NA coding protein psRNATarget
BT056134.2
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:1599   AGGGAUUGAAGCCUGGUCCGA   1619

0.0 Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds NA coding protein psRNATarget
BT056134.2
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =*|||*|||=|||||||||||
targets:1867   GAGGAAUGAGGCCUGGUCCGA   1887

2.5 Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds NA coding protein psRNATarget
LQ235370.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1365 from Patent EP2985353 NA coding protein psRNATarget
JB163402.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1066 from Patent EP2559767 NA coding protein psRNATarget
JB163701.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1365 from Patent EP2559767 NA coding protein psRNATarget
HI402941.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1066 from Patent EP2074227 NA coding protein psRNATarget
LQ235071.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1066 from Patent EP2985353 NA coding protein psRNATarget
HI403240.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1365 from Patent EP2074227 NA coding protein psRNATarget
LQ235617.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1612 from Patent EP2985353 NA coding protein psRNATarget
LQ235238.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1233 from Patent EP2985353 NA coding protein psRNATarget
HI408663.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 6788 from Patent EP2074227 NA coding protein psRNATarget
HI403183.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1308 from Patent EP2074227 NA coding protein psRNATarget
JB163569.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1233 from Patent EP2559767 NA coding protein psRNATarget
HI403108.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1233 from Patent EP2074227 NA coding protein psRNATarget
HI403410.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1535 from Patent EP2074227 NA coding protein psRNATarget
JB163644.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1308 from Patent EP2559767 NA coding protein psRNATarget
JB169124.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 6788 from Patent EP2559767 NA coding protein psRNATarget
HI403487.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1612 from Patent EP2074227 NA coding protein psRNATarget
LQ240793.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 6788 from Patent EP2985353 NA coding protein psRNATarget
JB163948.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1612 from Patent EP2559767 NA coding protein psRNATarget
LQ235313.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1308 from Patent EP2985353 NA coding protein psRNATarget
JB163871.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1535 from Patent EP2559767 NA coding protein psRNATarget
LQ235540.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1535 from Patent EP2985353 NA coding protein psRNATarget
JB163596.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1260 from Patent EP2559767 NA coding protein psRNATarget
HI403443.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1568 from Patent EP2074227 NA coding protein psRNATarget
LQ235265.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1260 from Patent EP2985353 NA coding protein psRNATarget
HI403135.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1260 from Patent EP2074227 NA coding protein psRNATarget
LQ235573.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1568 from Patent EP2985353 NA coding protein psRNATarget
JB163904.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1568 from Patent EP2559767 NA coding protein psRNATarget
HI403131.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1256 from Patent EP2074227 NA coding protein psRNATarget
JB163898.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1562 from Patent EP2559767 NA coding protein psRNATarget
LQ235567.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1562 from Patent EP2985353 NA coding protein psRNATarget
HI403437.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1562 from Patent EP2074227 NA coding protein psRNATarget
LQ235261.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1256 from Patent EP2985353 NA coding protein psRNATarget
JB163592.1
ncRNA:21   UCCCUAACUUCGGACCAGGCU   1
  =||||*|||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

1.0 Sequence 1256 from Patent EP2559767 NA coding protein psRNATarget
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