Search result

BaseInfo

ncRNA ID	novel_zma_miR295
Species	Zea mays
Class	miRNA
Genome position	Chr5:217871076-217871218 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2287165
Length	24
Mature sequence(if miRNA)	120 - GAGGGCUUGUUCGGUUAUUCCCAA - 143
Stem-loop(if miRNA)	--G                -   C    A  CA       GA          AA    UGUGAAGAAGUUUGA    AGGGCUUGUUCGGUUA UUC CAAU CA  UGGAUUG  UGGGAUUGGA  AAAU               A    |||||||||||||||| ||| |||| ||  |||||||  ||||||||||  ||||    UCCCGAACAAGCCAAU GAG GUUA GU  ACCUAAC  GCCCUAACCU  ACCC               C GAG                C   A    G  AC       UC          --    AAACUUAGGGUUUGU
Stem-loop sequence	GAGGGCUUGUUCGGUUAUUCCCAAUACACAUGGAUUGGAUGGGAUUGGAAAAAAUUGUGAAGAAGUUUGAACUGUUUGGGAUUCAAACCCAUCCAAUCCCGCUCAAUCCACAUGGAUUGAGAGCUAACCGAACAAGCCCUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001291617.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||| targets:794   UUGGGAAUAACCGAACAAGCCCUC   817 Target Full Sequence	0.0	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||| targets:794   UUGGGAAUAACCGAACAAGCCCUC   817 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||| targets:1037   UUGGGAAUAACCGAACAAGCCCUC   1060 Target Full Sequence	0.0	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
BT018247.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:485   UUGGGAAUAACCGAACAAGCCCUU   508 Target Full Sequence	1.0	Zea mays clone EL01N0563E06.c mRNA sequence	NA	coding protein	psRNATarget
BT062563.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:1316   UUGGGAAUAACCGAACAAGCCCUU   1339 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:1316   UUGGGAAUAACCGAACAAGCCCUU   1339 Target Full Sequence	1.0	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
NM_001175812.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:1546   UUGGGAAUAACCGAACAAGCCCUU   1569 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA	NA	coding protein	psRNATarget
BT066364.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:1546   UUGGGAAUAACCGAACAAGCCCUU   1569 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds	NA	coding protein	psRNATarget
EU964623.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:1540   UUGGGAAUAACCGAACAAGCCCUU   1563 Target Full Sequence	1.0	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539702.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:2579   UUGGGAAUAACCGAACAAGCCCUU   2602 Target Full Sequence	1.0	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA	NA	coding protein	psRNATarget
XM_008645434.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:2559   UUGGGAAUAACCGAACAAGCCCUU   2582 Target Full Sequence	1.0	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676887.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||= targets:2668   UUGGGAAUAACCGAACAAGCCCUU   2691 Target Full Sequence	1.0	PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166347.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:120   UUGGGAAUAACCGAACAAGCCCUA   143 Target Full Sequence	1.0	Sequence 4011 from Patent EP2559767	NA	coding protein	psRNATarget
HI405886.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:120   UUGGGAAUAACCGAACAAGCCCUA   143 Target Full Sequence	1.0	Sequence 4011 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238016.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:120   UUGGGAAUAACCGAACAAGCCCUA   143 Target Full Sequence	1.0	Sequence 4011 from Patent EP2985353	NA	coding protein	psRNATarget
EU942632.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:283   UUGGGAAUAACCGAACAAGCCCUA   306 Target Full Sequence	1.0	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
EU968099.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:250   UUGGGAAUAACCGAACAAGCCCUA   273 Target Full Sequence	1.0	Zea mays clone 314232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149687.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:761   UUGGGAAUAACCGAACAAGCCCUA   784 Target Full Sequence	1.0	Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA	NA	coding protein	psRNATarget
EU957313.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:761   UUGGGAAUAACCGAACAAGCCCUA   784 Target Full Sequence	1.0	Zea mays clone 1588341 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669845.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:1823   UUGGGAAUAACCGAACAAGCCCUG   1846 Target Full Sequence	1.0	PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970939.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:2130   UUGGGAAUAACCGAACAAGCCCUA   2153 Target Full Sequence	1.0	Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543938.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:313   UUGGGAAUAACCGAACAAGCCCUA   336 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543937.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:313   UUGGGAAUAACCGAACAAGCCCUA   336 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543936.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:313   UUGGGAAUAACCGAACAAGCCCUA   336 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543935.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||||||* targets:313   UUGGGAAUAACCGAACAAGCCCUA   336 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT068791.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||=|||* targets:1370   UUGGGAAUAACCGAACAAGUCCUA   1393 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   AACCCU-UAUUGGCUUGUUCGGGAG   1   ||||||-|||||||||||||||||= targets:1993   UUGGGAUAUAACCGAACAAGCCCUU   2017 Target Full Sequence	3.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY111036.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||*|||= targets:200   UUGGGAAUAACCGAACAAGGCCUU   223 Target Full Sequence	2.5	Zea mays CL1582_4 mRNA sequence	NA	coding protein	psRNATarget
BT070056.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||*|||= targets:866   UUGGGAAUAACCGAACAAGACCUU   889 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0374H10 mRNA, complete cds	NA	coding protein	psRNATarget
AY103687.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||*|||= targets:1177   UUGGGAAUAACCGAACAAGACCUU   1200 Target Full Sequence	2.5	Zea mays PCO106710 mRNA sequence	NA	coding protein	psRNATarget
BT018592.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||*|||||||||||= targets:1122   UUGGGAAUAACGGAACAAGCCCUU   1145 Target Full Sequence	2.5	Zea mays clone EL01N0447E06.d mRNA sequence	NA	coding protein	psRNATarget
BT086570.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||*|||= targets:241   UUGGGAAUAACCGAACAAGGCCUU   264 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds	NA	coding protein	psRNATarget
AY109413.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||*|||= targets:1673   UUGGGAAUAACCGAACAAGGCCUU   1696 Target Full Sequence	2.5	Zea mays CL2362_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008658770.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||= targets:2876   UUAGGAAUAACCGAACAAGCCCUU   2899 Target Full Sequence	1.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658769.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||= targets:2885   UUAGGAAUAACCGAACAAGCCCUU   2908 Target Full Sequence	1.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235117.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||*|||* targets:126   UUGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1112 from Patent EP2985353	NA	coding protein	psRNATarget
JB163448.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||*|||* targets:126   UUGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1112 from Patent EP2559767	NA	coding protein	psRNATarget
HI402987.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||||||||||||||||||*|||* targets:126   UUGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1112 from Patent EP2074227	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||*||||||||||||||||||* targets:1445   UUGGAAAUAACCGAACAAGCCCUA   1468 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||*||||||||||||||||||* targets:1489   UUGGAAAUAACCGAACAAGCCCUA   1512 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||*||||||||||||||||||* targets:1507   UUGGAAAUAACCGAACAAGCCCUA   1530 Target Full Sequence	1.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||*||||||||||||||||||* targets:1521   UUGGAAAUAACCGAACAAGCCCUA   1544 Target Full Sequence	1.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||*||||||||||||||||||* targets:1521   UUGGAAAUAACCGAACAAGCCCUA   1544 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550022.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:3711   UUAGGAAUAACCGAACAAGCCCUA   3734 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020550024.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:3735   UUAGGAAUAACCGAACAAGCCCUA   3758 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020550021.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:3789   UUAGGAAUAACCGAACAAGCCCUA   3812 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020550020.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:3783   UUAGGAAUAACCGAACAAGCCCUA   3806 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020550017.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:3791   UUAGGAAUAACCGAACAAGCCCUA   3814 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550019.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:3778   UUAGGAAUAACCGAACAAGCCCUA   3801 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550016.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:3853   UUAGGAAUAACCGAACAAGCCCUA   3876 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550018.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:4177   UUAGGAAUAACCGAACAAGCCCUA   4200 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550015.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||||* targets:4273   UUAGGAAUAACCGAACAAGCCCUA   4296 Target Full Sequence	1.0	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ113075.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||*|||||||=|||||||||||= targets:10   UUGAGAAUAACUGAACAAGCCCUU   33 Target Full Sequence	2.5	TSA: Zea mays contig48736, mRNA sequence	NA	coding protein	psRNATarget
HI409644.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *|*||||||||||||||||||||= targets:122   AUAGGAAUAACCGAACAAGCCCUU   145 Target Full Sequence	1.0	Sequence 7769 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241774.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *|*||||||||||||||||||||= targets:122   AUAGGAAUAACCGAACAAGCCCUU   145 Target Full Sequence	1.0	Sequence 7769 from Patent EP2985353	NA	coding protein	psRNATarget
JB170105.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *|*||||||||||||||||||||= targets:122   AUAGGAAUAACCGAACAAGCCCUU   145 Target Full Sequence	1.0	Sequence 7769 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235216.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||= targets:121   AUGGGAAUAACCGAACAAGGCCUU   144 Target Full Sequence	2.5	Sequence 1211 from Patent EP2985353	NA	coding protein	psRNATarget
JB163547.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||= targets:121   AUGGGAAUAACCGAACAAGGCCUU   144 Target Full Sequence	2.5	Sequence 1211 from Patent EP2559767	NA	coding protein	psRNATarget
HI403086.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||= targets:121   AUGGGAAUAACCGAACAAGGCCUU   144 Target Full Sequence	2.5	Sequence 1211 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||= targets:2520   AUGGGAAUAACCGAACAAGGCCUU   2543 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674543.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *|*||||||||||||||||||||= targets:2524   AUAGGAAUAACCGAACAAGCCCUU   2547 Target Full Sequence	1.0	PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *|*||||||||||||||||||||= targets:304   AUAGGAAUAACCGAACAAGCCCUU   327 Target Full Sequence	1.0	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||| targets:860   UUGAAAAUAACCGAACAAGCCCUC   883 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||| targets:912   UUGAAAAUAACCGAACAAGCCCUC   935 Target Full Sequence	0.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||| targets:912   UUGAAAAUAACCGAACAAGCCCUC   935 Target Full Sequence	0.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   AACCCUU-AUUGGCUUGUUCGGGAG   1   |||*||=-||||||||||||||||| targets:43   UUGAGAGCUAACCGAACAAGCCCUC   67 Target Full Sequence	3.0	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
EZ062569.1	ncRNA:22   CCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||||| targets:1   GGAAAUAACCGAACAAGCCCUC   22 Target Full Sequence	0.0	TSA: Zea mays contig63691, mRNA sequence	NA	coding protein	psRNATarget
EZ074510.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:71   AUGGGAAUAACCGAACAAGACCUA   94 Target Full Sequence	2.5	TSA: Zea mays contig10147, mRNA sequence	NA	coding protein	psRNATarget
HI403070.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:114   AUGGGAAUAACCGAACAAGGCCUG   137 Target Full Sequence	2.5	Sequence 1195 from Patent EP2074227	NA	coding protein	psRNATarget
JB163531.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:114   AUGGGAAUAACCGAACAAGGCCUG   137 Target Full Sequence	2.5	Sequence 1195 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235200.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:114   AUGGGAAUAACCGAACAAGGCCUG   137 Target Full Sequence	2.5	Sequence 1195 from Patent EP2985353	NA	coding protein	psRNATarget
HI403092.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:126   AUGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1217 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235222.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:126   AUGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1217 from Patent EP2985353	NA	coding protein	psRNATarget
JB163553.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:126   AUGGGAAUAACCGAACAAGGCCUA   149 Target Full Sequence	2.5	Sequence 1217 from Patent EP2559767	NA	coding protein	psRNATarget
BT084790.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:1134   AUGGGAAUAACCGAACAAGACCUA   1157 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0181D14 mRNA, complete cds	NA	coding protein	psRNATarget
EU960091.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *|*||||||||||||||||||||* targets:1191   GUAGGAAUAACCGAACAAGCCCUA   1214 Target Full Sequence	1.0	Zea mays clone 221636 mRNA sequence	NA	coding protein	psRNATarget
NM_001175804.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:2973   AUGGGAAUAACCGAACAAGACCUA   2996 Target Full Sequence	2.5	Zea mays putative ARF GTPase activating domain protein with ankyrin repeat-containing protein (LOC100383138), mRNA	NA	coding protein	psRNATarget
BT066344.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   *||||||||||||||||||*|||* targets:2973   AUGGGAAUAACCGAACAAGACCUA   2996 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0346C18 mRNA, complete cds	NA	coding protein	psRNATarget
BT083591.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ***||||||||||||||||||||* targets:1207   ACAGGAAUAACCGAACAAGCCCUA   1230 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds	NA	coding protein	psRNATarget
EU973712.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ***||||||||||||||||||||* targets:1311   ACAGGAAUAACCGAACAAGCCCUA   1334 Target Full Sequence	1.0	Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158639.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ***||||||||||||||||||||* targets:1311   ACAGGAAUAACCGAACAAGCCCUA   1334 Target Full Sequence	1.0	Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||= targets:469   UUGAAAAUAACCGAACAAGCCCUU   492 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||= targets:808   UUGAAAAUAACCGAACAAGCCCUU   831 Target Full Sequence	1.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147267.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||*||||||||||||||*|||= targets:1566   UUGGAAAUAACCGAACAAGGCCUU   1589 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA	NA	coding protein	psRNATarget
BT039499.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||*||||||||||||||*|||= targets:1566   UUGGAAAUAACCGAACAAGGCCUU   1589 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds	NA	coding protein	psRNATarget
BT018572.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||*||||||||||||||||*|||= targets:1865   UUAGGAAUAACCGAACAAGGCCUU   1888 Target Full Sequence	2.5	Zea mays clone EL01N0443D02.d mRNA sequence	NA	coding protein	psRNATarget
XM_020538542.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||*||||||||*||||||||||= targets:85   UUGAGAAUAACCAAACAAGCCCUU   108 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103628650 (LOC103628650), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||= targets:1000   UUGAAAAUAACCGAACAAGCCCUU   1023 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||= targets:3144   UUGAAAAUAACCGAACAAGCCCUU   3167 Target Full Sequence	1.0	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_020542807.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||-||||||||||||||*|||| targets:2567   UUGG-AAUAACCGAACAAGGCCUC   2589 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542806.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||-||||||||||||||*|||| targets:2567   UUGG-AAUAACCGAACAAGGCCUC   2589 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542805.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   ||||-||||||||||||||*|||| targets:2567   UUGG-AAUAACCGAACAAGGCCUC   2589 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ092886.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:92   UUGAAAAUAACCGAACAAGCCCUA   115 Target Full Sequence	1.0	TSA: Zea mays contig28535, mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:922   UUGAAAAUAACCGAACAAGCCCUG   945 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:870   UUGAAAAUAACCGAACAAGCCCUG   893 Target Full Sequence	1.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:868   UUGAAAAUAACCGAACAAGCCCUG   891 Target Full Sequence	1.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:868   UUGAAAAUAACCGAACAAGCCCUG   891 Target Full Sequence	1.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:869   UUGAAAAUAACCGAACAAGCCCUG   892 Target Full Sequence	1.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:941   UUGAAAAUAACCGAACAAGCCCUG   964 Target Full Sequence	1.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:1071   UUGAAAAUAACCGAACAAGCCCUA   1094 Target Full Sequence	1.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:1184   UUGAAAAUAACCGAACAAGCCCUA   1207 Target Full Sequence	1.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:1109   UUGAAAAUAACCGAACAAGCCCUA   1132 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:1222   UUGAAAAUAACCGAACAAGCCCUA   1245 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:46   UUGAAAAUAACCGAACAAGCCCUA   69 Target Full Sequence	1.0	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:1722   UUGAAAAUAACCGAACAAGCCCUG   1745 Target Full Sequence	1.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:2004   UUGAAAAUAACCGAACAAGCCCUA   2027 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   AACCCUUAUUGGCUUGUUCGGGAG   1   |||**||||||||||||||||||* targets:2004   UUGAAAAUAACCGAACAAGCCCUA   2027 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget