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BaseInfo

ncRNA ID	novel_zma_miR291
Species	Zea mays
Class	miRNA
Genome position	Chr5:221338339-221338430 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089713
Length	24
Mature sequence(if miRNA)	1 - AAACCGGAGAGGAUUAGAGGGGCU - 24
Stem-loop(if miRNA)	--         A     A   GG C        A  UU       A   AAACCGGAG GGAUU GAG  G UAGAAUCC CU  UUAUUUA A   ||||||||| ||||| |||  | |||||||| ||  |||||||   UUUGGCUUC CUUAA CUC  C AUCUUAGG GA  AAUAAGU U AU         C     C   AA A        G  UU       U
Stem-loop sequence	AAACCGGAGAGGAUUAGAGGGGCUAGAAUCCACUUUUUAUUUAAAUUUGAAUAAUUAGGGGAUUCUAACAACUCCAAUUCCCUUCGGUUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543912.1	ncRNA:24   UCGGGGAGAUUAGGAGAGGCCAAA   1   ||||||||*||||||=|||||||| targets:4128   AGCCCCUCCAAUCCUUUCCGGUUU   4151 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
XM_008647761.2	ncRNA:24   UCGGGGAGAUUAGGAGAGGCC-AAA   1   ||=|=||||||||||||||||-||| targets:939   AGUCUCUCUAAUCCUCUCCGGAUUU   963 Target Full Sequence	3.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:24   UCGGGGAGAUUAGGAGAGGCC-AAA   1   ||=|=||||||||||||||||-||| targets:939   AGUCUCUCUAAUCCUCUCCGGAUUU   963 Target Full Sequence	3.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001175145.1	ncRNA:24   UCGGGGAGAUUAGGAGAGGCCAAA   1   |||*|||||=||||||||||*||| targets:1513   AGCACCUCUGAUCCUCUCCGAUUU   1536 Target Full Sequence	2.5	Zea mays putative MATE efflux family protein (LOC100382400), mRNA	NA	coding protein	psRNATarget
BT064167.1	ncRNA:24   UCGGGGAGAUUAGGAGAGGCCAAA   1   |||*|||||=||||||||||*||| targets:1513   AGCACCUCUGAUCCUCUCCGAUUU   1536 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0143P12 mRNA, complete cds	NA	coding protein	psRNATarget
AY110186.1	ncRNA:24   UCGGGGAGAUUAGGAGAGGCCAAA   1   ||=**||=||||||||||||||*| targets:938   AGUGACUUUAAUCCUCUCCGGUAU   961 Target Full Sequence	2.5	Zea mays CL142_1 mRNA sequence	NA	coding protein	psRNATarget
EU949300.1	ncRNA:24   UCGGGGAGAUUAGGAGAGGCCAAA   1   ||=**||=||||||||||||||*| targets:938   AGUGACUUUAAUCCUCUCCGGUAU   961 Target Full Sequence	2.5	Zea mays clone 400899 mRNA sequence	NA	coding protein	psRNATarget
NM_001158808.2	ncRNA:24   UCGGGGAGAUUAGGAGAGGCCAAA   1   **=|=||||*|||*|||||||||| targets:1040   UCUCUCUCUUAUCAUCUCCGGUUU   1063 Target Full Sequence	2.5	Zea mays ras-related protein Rab-18 (LOC100285919), mRNA	NA	coding protein	psRNATarget
EU974659.1	ncRNA:24   UCGGGGAGAUUAGGAGAGGCCAAA   1   **=|=||||*|||*|||||||||| targets:1042   UCUCUCUCUUAUCAUCUCCGGUUU   1065 Target Full Sequence	2.5	Zea mays clone 455411 ras-related protein Rab-18 mRNA, complete cds	NA	coding protein	psRNATarget