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BaseInfo

ncRNA ID novel_zma_miR288
Species Zea mays
Class miRNA
Genome position Chr5:214039662-214039717 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089715;SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR5451004;SRR5451005;SRR2089699;SRR2089700;SRR2089702;SRR2089703;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - AAAAUGCGGAUACGAAAACGGGAG - 24
Stem-loop(if miRNA) --      --    U    AA        G
  AAAAUG  CGGA ACGA  ACGGGAGA G
  ||||||  |||| ||||  ||||||||
  UUUUAC  GCCU UGCU  UGUCUUUU A
AC      CU    U    --        G
Stem-loop sequence AAAAUGCGGAUACGAAAACGGGAGAGGAGUUUUCUGUUCGUUUCCGUCCAUUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020543912.1
ncRNA:24   GAGGGCAAAAGCAUAGGCGUAAAA   1
  |||||||||*|*||||||||||||
targets:5709   CUCCCGUUUCCAUAUCCGCAUUUU   5732

2.5 PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA NA coding protein psRNATarget