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BaseInfo

ncRNA ID	novel_zma_miR287
Species	Zea mays
Class	miRNA
Genome position	Chr5:211404272-211404353 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR5451003;SRR5451004;SRR5451005;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	1 - GGAGGAGAUUGGAGGGGCUAA - 21
Stem-loop(if miRNA)	--     A                    C           A   GGAGG GAUUGGAGGGGCUAAAAUUC CUUGCUAUUCA A   ||||| |||||||||||||||||||| |||||||||||   UCUCC CUAACCUCCCCGAUUUUAGG GAACGAUAAGU U UU     C                    A           U
Stem-loop sequence	GGAGGAGAUUGGAGGGGCUAAAAUUCCCUUGCUAUUCAAAUUUGAAUAGCAAGAGGAUUUUAGCCCCUCCAAUCCCCUCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||||||||||||||*||||| targets:3499   UUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||||||||||||||*||||| targets:3534   UUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||||||||||||||*||||= targets:331   UUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:683   UUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1030   UUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1563   UUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1583   UUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1607   UUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AAUCGGGGAGGUUAGAGGAGG   1   |||*|||||||||||*||||| targets:1640   UUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget