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BaseInfo

ncRNA ID novel_zma_miR285
Species Zea mays
Class miRNA
Genome position Chr5:18189221-18189312 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089715;SRR1997865;SRR5451004;SRR2089704;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - CCAUGUGGAUUGGAUGGUAUUGAG - 24
Stem-loop(if miRNA) --CC            UG      -  CC    UAAAUACAUAACA
    AUGUGGAUUGGA  GUAUUG AG  GAUU             A
    ||||||||||||  |||||| ||  ||||             G
    UACACCUAAUCU  CAUAAC UU  CUAA             U
AAGA            CA      C  AC    CUAUACAUAAAAC
Stem-loop sequence CCAUGUGGAUUGGAUGGUAUUGAGCCGAUUUAAAUACAUAACAAGUCAAAAUACAUAUCAAUCCAUUCCAAUACACUCUAAUCCACAUAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551219.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||||||||||||||||||
targets:291   CUCAAUACCAUCCAAUCCACAUGG   314

0.0 PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA NA coding protein psRNATarget
NM_001350737.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||||||=|||||||||||
targets:4053   CUCAAUACCAUCUAAUCCACAUGG   4076

1.5 Zea mays phospholipase D family protein (LOC100272416), mRNA NA coding protein psRNATarget
BT054344.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:1131   CUCAAUACCAUUCAAUCCACAUGG   1154

1.5 Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds NA coding protein psRNATarget
NM_001152495.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||||||=||||||||||||
targets:1131   CUCAAUACCAUUCAAUCCACAUGG   1154

1.5 Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA NA coding protein psRNATarget
BT041309.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:107   CUCAAUAUCAUCCAAUCCACAUGG   130

1.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
BT041309.1
ncRNA:24   GAG-UUAUGGUAGGUUAGGUGUACC   1
  =||-|||*=||||||||||||||||
targets:179   UUCUAAUCUCAUCCAAUCCACAUGG   203

2.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
LQ238785.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:144   CUCAAUAUCAUCCAAUCCACAUGG   167

1.0 Sequence 4780 from Patent EP2985353 NA coding protein psRNATarget
JB167116.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:144   CUCAAUAUCAUCCAAUCCACAUGG   167

1.0 Sequence 4780 from Patent EP2559767 NA coding protein psRNATarget
HI406655.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||=||||||||||||||||
targets:144   CUCAAUAUCAUCCAAUCCACAUGG   167

1.0 Sequence 4780 from Patent EP2074227 NA coding protein psRNATarget
XM_020542631.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||=|||||||||||=||||
targets:6360   CUCAAUAUCAUCCAAUCCAUAUGG   6383

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542629.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||=|||||||||||=||||
targets:5945   CUCAAUAUCAUCCAAUCCAUAUGG   5968

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542630.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |||||||=|||||||||||=||||
targets:5883   CUCAAUAUCAUCCAAUCCAUAUGG   5906

2.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008654741.2
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||=||=||||||||||||
targets:1879   CUCAAUACUAUUCAAUCCACAUGG   1902

2.5 PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008654742.2
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||=||=||||||||||||
targets:1815   CUCAAUACUAUUCAAUCCACAUGG   1838

2.5 PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X2, mRNA NA coding protein psRNATarget
EU974368.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =||||||=||||||||||||||||
targets:1246   UUCAAUAUCAUCCAAUCCACAUGG   1269

1.0 Zea mays clone 447232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ238013.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||=||=||||||||||||
targets:76   CUCAAUACUAUUCAAUCCACAUGG   99

2.5 Sequence 4008 from Patent EP2985353 NA coding protein psRNATarget
HI405883.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||=||=||||||||||||
targets:76   CUCAAUACUAUUCAAUCCACAUGG   99

2.5 Sequence 4008 from Patent EP2074227 NA coding protein psRNATarget
JB166344.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||=||=||||||||||||
targets:76   CUCAAUACUAUUCAAUCCACAUGG   99

2.5 Sequence 4008 from Patent EP2559767 NA coding protein psRNATarget
EU970241.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||||*|||||||||||||
targets:1123   CUCAAUACCAGCCAAUCCACAUGG   1146

1.0 Zea mays clone 342550 mRNA sequence NA coding protein psRNATarget
XM_008660174.2
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||*||||||||||=||||||
targets:3594   CUCAAUCCCAUCCAAUCUACAUGG   3617

2.5 PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001159099.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=|||||||*|||||||||||||
targets:987   CUUAAUACCACCCAAUCCACAUGG   1010

1.0 Zea mays mitochondrial glycoprotein (LOC100286211), mRNA NA coding protein psRNATarget
EU976164.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=|||||||*|||||||||||||
targets:987   CUUAAUACCACCCAAUCCACAUGG   1010

1.0 Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
AY106055.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=|||||||*|||||||||||||
targets:983   CUUAAUACCACCCAAUCCACAUGG   1006

1.0 Zea mays PCO115884 mRNA sequence NA coding protein psRNATarget
BT086782.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=|=|=||||||||||||=||||
targets:636   CUUAGUGCCAUCCAAUCCAUAUGG   659

2.5 Zea mays full-length cDNA clone ZM_BFb0331G03 mRNA, complete cds NA coding protein psRNATarget
LQ239247.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||||*||||||=||||||
targets:78   CUCAAUACCACCCAAUCUACAUGG   101

2.5 Sequence 5242 from Patent EP2985353 NA coding protein psRNATarget
HI407117.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||||*||||||=||||||
targets:78   CUCAAUACCACCCAAUCUACAUGG   101

2.5 Sequence 5242 from Patent EP2074227 NA coding protein psRNATarget
JB167578.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||||||||||*||||||=||||||
targets:78   CUCAAUACCACCCAAUCUACAUGG   101

2.5 Sequence 5242 from Patent EP2559767 NA coding protein psRNATarget
XM_008654744.2
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=|||||||*||||||=||||||
targets:2158   CUUAAUACCACCCAAUCUACAUGG   2181

2.5 PREDICTED: Zea mays GTPase-activating protein gyp7 (LOC103633061), mRNA NA coding protein psRNATarget
NM_001143004.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*|||||||||||||||||||||*
targets:1409   UCCAAUACCAUCCAAUCCACAUGU   1432

1.0 Zea mays Sas10/Utp3/C1D family (pco144488), mRNA NA coding protein psRNATarget
BT037007.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*|||||||||||||||||||||*
targets:1409   UCCAAUACCAUCCAAUCCACAUGU   1432

1.0 Zea mays full-length cDNA clone ZM_BFb0151F19 mRNA, complete cds NA coding protein psRNATarget
EU952677.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=|||||||*=||||||||||||
targets:987   CUUAAUACCACUCAAUCCACAUGG   1010

2.5 Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
BT042439.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=|||||||*=||||||||||||
targets:965   CUUAAUACCACUCAAUCCACAUGG   988

2.5 Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds NA coding protein psRNATarget
BT066125.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=|||||||*=||||||||||||
targets:1074   CUUAAUACCACUCAAUCCACAUGG   1097

2.5 Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds NA coding protein psRNATarget
EU945995.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |*||||*|||||||||||||||||
targets:555   CCCAAUCCCAUCCAAUCCACAUGG   578

1.0 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
XM_020539455.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||||||||||||||||
targets:279   UCCAAUCCCAUCCAAUCCACAUGG   302

1.0 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551501.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||||||||||||||||
targets:1290   UCCAAUCCCAUCCAAUCCACAUGG   1313

1.0 PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA NA coding protein psRNATarget
HI410114.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||||||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

1.0 Sequence 8239 from Patent EP2074227 NA coding protein psRNATarget
JB170575.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||||||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

1.0 Sequence 8239 from Patent EP2559767 NA coding protein psRNATarget
LQ242244.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||||||||||||||||
targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99

1.0 Sequence 8239 from Patent EP2985353 NA coding protein psRNATarget
NM_001350089.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=||**|||||||||||||||||
targets:5897   CUUAAACCCAUCCAAUCCACAUGG   5920

2.0 Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA NA coding protein psRNATarget
XM_020538632.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=||**|||||||||||||||||
targets:4835   CUUAAACCCAUCCAAUCCACAUGG   4858

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020538631.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=||**|||||||||||||||||
targets:4834   CUUAAACCCAUCCAAUCCACAUGG   4857

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538630.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=||**|||||||||||||||||
targets:4086   CUUAAACCCAUCCAAUCCACAUGG   4109

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647808.2
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=||**|||||||||||||||||
targets:4047   CUUAAACCCAUCCAAUCCACAUGG   4070

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538633.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  ||=||**|||||||||||||||||
targets:3934   CUUAAACCCAUCCAAUCCACAUGG   3957

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA NA coding protein psRNATarget
EU973712.1
ncRNA:24   GAG-UUAUGGUAGGUUAGGUGUACC   1
  =||-|||*=||||||||||||||||
targets:1285   UUCUAAUCUCAUCCAAUCCACAUGG   1309

2.0 Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds NA coding protein psRNATarget
NM_001158639.1
ncRNA:24   GAG-UUAUGGUAGGUUAGGUGUACC   1
  =||-|||*=||||||||||||||||
targets:1285   UUCUAAUCUCAUCCAAUCCACAUGG   1309

2.0 Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA NA coding protein psRNATarget
BT083591.1
ncRNA:24   GAG-UUAUGGUAGGUUAGGUGUACC   1
  =||-|||*=||||||||||||||||
targets:1181   UUCUAAUCUCAUCCAAUCCACAUGG   1205

2.0 Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds NA coding protein psRNATarget
JB170105.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*=||||||||||||||||
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

2.0 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
LQ241774.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*=||||||||||||||||
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

2.0 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
HI409644.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*=||||||||||||||||
targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120

2.0 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
LQ235432.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||||||||||||=|||
targets:86   UCCAAUCCCAUCCAAUCCACGUGG   109

2.5 Sequence 1427 from Patent EP2985353 NA coding protein psRNATarget
HI403302.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||||||||||||=|||
targets:86   UCCAAUCCCAUCCAAUCCACGUGG   109

2.5 Sequence 1427 from Patent EP2074227 NA coding protein psRNATarget
JB163763.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||||||||||||=|||
targets:86   UCCAAUCCCAUCCAAUCCACGUGG   109

2.5 Sequence 1427 from Patent EP2559767 NA coding protein psRNATarget
XM_008653563.2
ncRNA:24   GAGUUA-UGGUAGGUUAGGUGUACC   1
  |||=*|-|||||||||||||||||*
targets:2342   CUCGUUUACCAUCCAAUCCACAUGC   2366

3.0 PREDICTED: Zea mays Protein SMG7 (LOC100384817), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020540677.1
ncRNA:24   GAGUUA-UGGUAGGUUAGGUGUACC   1
  |||=*|-|||||||||||||||||*
targets:2287   CUCGUUUACCAUCCAAUCCACAUGC   2311

3.0 PREDICTED: Zea mays Protein SMG7 (LOC100384817), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674543.2
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*||||||||||||||||*
targets:2499   UCCAAUCCCAUCCAAUCCACAUGA   2522

2.0 PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA NA coding protein psRNATarget
BT084284.1
ncRNA:24   GAGUUA-UGGUAGGUUAGGUGUACC   1
  |||=*|-|||||||||||||||||*
targets:349   CUCGUUUACCAUCCAAUCCACAUGC   373

3.0 Zea mays full-length cDNA clone ZM_BFb0098D05 mRNA, complete cds NA coding protein psRNATarget
NM_001177259.1
ncRNA:24   GAGUUA-UGGUAGGUUAGGUGUACC   1
  |||=*|-|||||||||||||||||*
targets:349   CUCGUUUACCAUCCAAUCCACAUGC   373

3.0 Zea mays Protein SMG7 (LOC100384817), mRNA NA coding protein psRNATarget
LQ238567.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |*||||*||*||||||||||||||
targets:73   CCCAAUCCCCUCCAAUCCACAUGG   96

2.0 Sequence 4562 from Patent EP2985353 NA coding protein psRNATarget
HI406437.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |*||||*||*||||||||||||||
targets:73   CCCAAUCCCCUCCAAUCCACAUGG   96

2.0 Sequence 4562 from Patent EP2074227 NA coding protein psRNATarget
JB166898.1
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  |*||||*||*||||||||||||||
targets:73   CCCAAUCCCCUCCAAUCCACAUGG   96

2.0 Sequence 4562 from Patent EP2559767 NA coding protein psRNATarget
XM_008678388.2
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||*|||||||||||||
targets:1829   UCCAAUCCCACCCAAUCCACAUGG   1852

2.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008678390.2
ncRNA:24   GAGUUAUGGUAGGUUAGGUGUACC   1
  =*||||*|||*|||||||||||||
targets:1813   UCCAAUCCCACCCAAUCCACAUGG   1836

2.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
BT066441.1
ncRNA:24   GAGU----UAUGGUAGGUUAGGUGUACC   1
  ||||----||*|||*|||||||||||||
targets:1525   CUCAUCUAAUCCCACCCAAUCCACAUGG   1552

2.0 Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds NA coding protein psRNATarget