Search result

BaseInfo

ncRNA ID	novel_zma_miR284
Species	Zea mays
Class	miRNA
Genome position	Chr5:196494697-196494785 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089713;SRR2089714;SRR2089715;SRR1997866;SRR2089699;SRR2089700;SRR2089703;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AGGGGACCGAAUUUAGGGGACGCU - 24
Stem-loop(if miRNA)	--  G                     C       --   AGAAUA   AG GGACCGAAUUUAGGGGACGCU CUGGAGA  CUG      U   || ||||||||||||||||||||| |||||||  |||      A   UC CCUGGCUUAAAUCCCCUGCGA GACUUCU  GAC      U AA  G                     C       AA   AGGAGA
Stem-loop sequence	AGGGGACCGAAUUUAGGGGACGCUCCUGGAGACUGAGAAUAUAUAGAGGACAGAAUCUUCAGCAGCGUCCCCUAAAUUCGGUCCGCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008681125.2	ncRNA:24   UCGCAGGGGAUUUAAGCCAGGGGA   1   |||||||||||||||||||||||| targets:2267   AGCGUCCCCUAAAUUCGGUCCCCU   2290 Target Full Sequence	0.0	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649073.2	ncRNA:24   UCGCAGGGGAUUUAAGCCAGGGGA   1   ||=|||||||||||||||||=||| targets:1888   AGUGUCCCCUAAAUUCGGUCUCCU   1911 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649072.2	ncRNA:24   UCGCAGGGGAUUUAAGCCAGGGGA   1   ||=|||||||||||||||||=||| targets:1987   AGUGUCCCCUAAAUUCGGUCUCCU   2010 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088287.1	ncRNA:24   UCGCAGGGGAUUUAAGCCAGGGGA   1   |||||||=||||||||*||||||| targets:595   AGCGUCCUCUAAAUUCCGUCCCCU   618 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   UCGCAGGGGAUUUAAGCCAGGGGA   1   |||||||=||||||||*||||||| targets:662   AGCGUCCUCUAAAUUCCGUCCCCU   685 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550176.1	ncRNA:24   UCGCAGGGGAUUUAAGCCAGGGGA   1   |*|||||||||||||||||||=|| targets:1011   AACGUCCCCUAAAUUCGGUCCUCU   1034 Target Full Sequence	1.5	PREDICTED: Zea mays small G protein signaling modulator 1 (LOC103649936), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008673578.2	ncRNA:24   UCGCAGGGGAUUUAAGCCAGGGGA   1   |*|||||||||||||||*|||||| targets:65   AACGUCCCCUAAAUUCGAUCCCCU   88 Target Full Sequence	1.5	PREDICTED: Zea mays protein ALP1-like (LOC103649274), mRNA	NA	coding protein	psRNATarget