Search result

BaseInfo

ncRNA ID novel_zma_miR283
Species Zea mays
Class miRNA
Genome position Chr5:195034411-195034470 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089707
Length 22
Mature sequence(if miRNA) 1 - UAACACUCGGCAAAGAAGGCUU - 22
Stem-loop(if miRNA) --UAA                CUUUAUC G
     CACUCGGCAAAGAAGG       G U
     ||||||||||||||||       |
     GUGAGCCGUUUCUUCC       C U
GUACC                UUUGAAC C
Stem-loop sequence UAACACUCGGCAAAGAAGGCUUUAUCGGUUCCCAAGUUUCCUUCUUUGCCGAGUGCCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008680068.2
ncRNA:22   UUCGGAAGAAACGGCUCACAAU   1
  =||||||||||||||||||||*
targets:193   GAGCCUUCUUUGCCGAGUGUUU   214

1.0 PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA NA coding protein psRNATarget
JB167428.1
ncRNA:22   UUCGGAAGAAACGGCUCACAAU   1
  =||||*|||||||||||||||*
targets:17   GAGCCAUCUUUGCCGAGUGUUU   38

2.0 Sequence 5092 from Patent EP2559767 NA coding protein psRNATarget
LQ239097.1
ncRNA:22   UUCGGAAGAAACGGCUCACAAU   1
  =||||*|||||||||||||||*
targets:17   GAGCCAUCUUUGCCGAGUGUUU   38

2.0 Sequence 5092 from Patent EP2985353 NA coding protein psRNATarget
HI406967.1
ncRNA:22   UUCGGAAGAAACGGCUCACAAU   1
  =||||*|||||||||||||||*
targets:17   GAGCCAUCUUUGCCGAGUGUUU   38

2.0 Sequence 5092 from Patent EP2074227 NA coding protein psRNATarget
EU949560.1
ncRNA:22   UUCGGAAGAAACGGCUCACAAU   1
  |||**||||||||||||||||*
targets:588   AAGGGUUCUUUGCCGAGUGUUU   609

3.0 Zea mays clone 424771 mRNA sequence NA coding protein psRNATarget
JB166664.1
ncRNA:22   UUCGGAAGAAACGGCUCACAAU   1
  |*|**||||||||||||||||=
targets:4   ACGGAUUCUUUGCCGAGUGUUG   25

3.0 Sequence 4328 from Patent EP2559767 NA coding protein psRNATarget
LQ238333.1
ncRNA:22   UUCGGAAGAAACGGCUCACAAU   1
  |*|**||||||||||||||||=
targets:4   ACGGAUUCUUUGCCGAGUGUUG   25

3.0 Sequence 4328 from Patent EP2985353 NA coding protein psRNATarget
HI406203.1
ncRNA:22   UUCGGAAGAAACGGCUCACAAU   1
  |*|**||||||||||||||||=
targets:4   ACGGAUUCUUUGCCGAGUGUUG   25

3.0 Sequence 4328 from Patent EP2074227 NA coding protein psRNATarget