| ncRNA ID | osa-miR1428e-3p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr3:23076870-23076979 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 82 - UAAGAUAAUGCCAUGAAUUUG - 102 |
| Stem-loop(if miRNA) |
CA CC U AA G A A GCGCUUGGCGAAUUCA GGC UAUCUUGUGGUA G CU GGUACGCG UG U |||||||||||||||| ||| |||||||||||| | || |||||||| || U UGCGAACUGUUUAAGU CCG AUAGAAUACCAU C GG UUAUGCGU AC U -A UA U GG G C G |
| Stem-loop sequence | GCGCUUGGCGAAUUCACAGGCCCUAUCUUGUGGUAUGAACUGGGUACGCGAUGAUUUGCACUGCGUAUUGGGGGCUUACCAUAAGAUAAUGCCAUGAAUUUGUCAAGCGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015757897.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4349138 (LOC4349138), mRNA | uncharacterized LOC4349138(LOC4349138) | coding protein | psRNATarget |
| 1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |
| 2 | PMID:19055717
"Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"; Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M; BMC Plant Biol. 8:123(2008). |
| 3 | PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009). |