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BaseInfo

ncRNA ID	novel_zma_miR278
Species	Zea mays
Class	miRNA
Genome position	Chr5:172222817-172222864 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287159;SRR2287160;SRR2287161;SRR2287164;SRR1997865;SRR2089699;SRR2089700;SRR2089701;SRR2089704;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	25 - CUAAAUUUAGAGGACGUUGUUGGA - 48
Stem-loop(if miRNA)	--                 --C  U   CAGCAGCGUCCUCUAAA   GG U   |||||||||||||||||   ||   GUUGUUGCAGGAGAUUU   UC C AG                 AAA  U
Stem-loop sequence	CAGCAGCGUCCUCUAAACGGUUCUCUAAAUUUAGAGGACGUUGUUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166311.1	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   |=||=||=|||||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	1.0	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237980.1	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   |=||=||=|||||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	1.0	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
HI405850.1	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   |=||=||=|||||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	1.0	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
EZ099679.1	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   ||||=||==||||||||||||||| targets:104   UCCAGCAGUGUCCUCUAAAUUUAG   127 Target Full Sequence	2.0	TSA: Zea mays contig35334, mRNA sequence	NA	coding protein	psRNATarget
BT085234.2	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   ||||==|=|||||||||||||||| targets:7   UCCAGUAGCGUCCUCUAAAUUUAG   30 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds	NA	coding protein	psRNATarget
LQ237984.1	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   ||||*||=|||=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	2.5	Sequence 3979 from Patent EP2985353	NA	coding protein	psRNATarget
HI405854.1	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   ||||*||=|||=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	2.5	Sequence 3979 from Patent EP2074227	NA	coding protein	psRNATarget
JB166315.1	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   ||||*||=|||=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	2.5	Sequence 3979 from Patent EP2559767	NA	coding protein	psRNATarget
EU943313.1	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   |=|*=||=||||||||||||||*| targets:575   UUCUGCAGCGUCCUCUAAAUUUCG   598 Target Full Sequence	2.5	Zea mays clone 1596440 mRNA sequence	NA	coding protein	psRNATarget
XM_008683257.2	ncRNA:24   AGGUUGUUGCAGGAGAUUUAAAUC   1   |=||=|||||||||||||||||** targets:4150   UUCAGCAACGUCCUCUAAAUUUCA   4173 Target Full Sequence	2.5	PREDICTED: Zea mays Tubulin-folding cofactor D (LOC100273796), transcript variant X1, mRNA	NA	coding protein	psRNATarget