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BaseInfo

ncRNA ID	novel_zma_miR266
Species	Zea mays
Class	miRNA
Genome position	Chr5:11938785-11938870 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089712;SRR2089698
Length	24
Mature sequence(if miRNA)	63 - GUCGCCAGCGCGGGGUAGGAGGAG - 86
Stem-loop(if miRNA)	--  A         A   C A    AAA   - -     -     G   CC CCUGCUUCG UGC G CGGC   GCA C GCCGG CUCGA G   || ||||||||| ||| | ||||   ||| | ||||| |||||   GG GGAUGGGGC GCG C GCUG   CGU G UGGCC GGGCU G GA  A         -   A C    --A   A A     C     C
Stem-loop sequence	CCACCUGCUUCGAUGCCGACGGCAAAGCACGCCGGCUCGAGGGCUCGGGCCCGGUAGAUGCAGUCGCCAGCGCGGGGUAGGAGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943639.1	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   *||||||||||||||||||||||| targets:1334   GUCCUCCUACCCCGCGCUGGCGAC   1357 Target Full Sequence	0.0	Zea mays clone 1666751 mRNA sequence	NA	coding protein	psRNATarget
XM_020540296.1	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   *||||||||||||||||||||||| targets:618   GUCCUCCUACCCCGCGCUGGCGAC   641 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100192521 (LOC100192521), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660954.2	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   |||||||||||*|||||||||||| targets:268   CUCCUCCUACCGCGCGCUGGCGAC   291 Target Full Sequence	1.5	PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660953.2	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   |||||||||||*|||||||||||| targets:268   CUCCUCCUACCGCGCGCUGGCGAC   291 Target Full Sequence	1.5	PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546417.1	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   |||||||||||*|||||||||||| targets:65   CUCCUCCUACCGCGCGCUGGCGAC   88 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized WD repeat-containing protein alr3466-like (LOC103637587), mRNA	NA	coding protein	psRNATarget
XM_008658066.2	ncRNA:24   GAGG------AGGAUGGGGCGCGACCGCUG   1   =|||------|||||||||||||||||||| targets:423   UUCCCCGCAUUCCUACCCCGCGCUGGCGAC   452 Target Full Sequence	0.0	PREDICTED: Zea mays putative mitochondrial transcription termination factor family protein (mTRF8), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544541.1	ncRNA:24   GAGG------AGGAUGGGGCGCGACCGCUG   1   =|||------|||||||||||||||||||| targets:498   UUCCCCGCAUUCCUACCCCGCGCUGGCGAC   527 Target Full Sequence	0.0	PREDICTED: Zea mays putative mitochondrial transcription termination factor family protein (mTRF8), transcript variant X2, mRNA	NA	coding protein	psRNATarget