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BaseInfo

ncRNA ID	osa-miR821a
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:22974225-22974498 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	15 - AAGUCAUCAACAAAAAAGUUGAAU - 38
Stem-loop(if miRNA)	A    C                  A                          A            GG C          AC   A     A      C            A  G      CUCUUAUC     U GAU UCAG UGAAAAAGUCAUCAACAA AAAGUUGAAUAACUCAUCAAGAUCUA AACUUUUAUUUU  U AUUUCUUCAU  GAC AAGUG UAGUAA AUUGUUCACAGA UU ACAUAU        UGGUU U ||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  | ||||||||||  ||| ||||| |||||| |||||||||||| || ||||||        ||||| A CUA AGUU ACUUUUUCAGUAGUUGUU UUUCAACUUAUUGAGUAGUUCUAGAU UUGAAAAUAAAA  A UAAAGAAGUA  CUG UUUAC AUCAUU UAAUAAGUGUUU AA UGUAUA        AUCAA U    A    A                  G                          A            AA -          GA   C     A      A            A  A      UACACAAU     A
Stem-loop sequence	GAUAUCAGCUGAAAAAGUCAUCAACAAAAAAGUUGAAUAACUCAUCAAGAUCUAAAACUUUUAUUUUGGUCAUUUCUUCAUACGACAAAGUGAUAGUAACAUUGUUCACAGAAUUGACAUAUCUCUUAUCUGGUUUUAUAAACUAUAACACAUAUAUGUAAAAUUUGUGAAUAAUAUUACUAACAUUUCGUCAGAUGAAGAAAUAAAAAAAUAAAAGUUAUAGAUCUUGAUGAGUUAUUCAACUUUGUUGUUGAUGACUUUUUCAAUUGAAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107543.1	ncRNA:24   UAAGUUGAAAAAACAACUACUGAA   1   ||*|||||||*||||||||||||| targets:1348   AUACAACUUUGUUGUUGAUGACUU   1371 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
XM_015764207.1	ncRNA:24   UAAGUUGAAAAAACAACUACUGAA   1   ||*|||||||*||*|||||||||| targets:73   AUACAACUUUGUUAUUGAUGACUU   96 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:24   UAAGUUGAAAAAACAACUACUGAA   1   ||*|||||||*||*|||||||||| targets:73   AUACAACUUUGUUAUUGAUGACUU   96 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:24   UAAGUUGAAAAAACAACUACUGAA   1   ||*|||||||*||*|||||||||| targets:73   AUACAACUUUGUUAUUGAUGACUU   96 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764209.1	ncRNA:24   UAAGUUGAAAAAACAACUACUGAA   1   ||*|||||||*||*|||||||||| targets:73   AUACAACUUUGUUAUUGAUGACUU   96 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
CT831299.1	ncRNA:24   UAA-GUUGAAAAAACAACUACUGAA   1   =||-=||||||*||*|||||||||| targets:955   GUUAUAACUUUGUUUUUGAUGACUU   979 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence	NA	coding protein	psRNATarget
AK109451.1	ncRNA:24   UA-AGUUGAAA-AAACAACUACUGAA   1   ||-||**||||-|||||||||||||| targets:259   AUAUCCUCUUUGUUUGUUGAUGACUU   284 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-117-E01, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"; Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH; FEBS Lett. 580:5111-5116(2006).