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BaseInfo

ncRNA ID novel_zma_miR257
Species Zea mays
Class miRNA
Genome position Chr4:175861772-175861840 [-]
Reference genome RefGen_v4
Source SRR1583943;SRR1583944;SRR2638137
Length 24
Mature sequence(if miRNA) 1 - AUAUGUCUCCGUUGCAACGCACGA - 24
Stem-loop(if miRNA) --A                         U  CG U
   UGCGUUGCAACGGGGACAUAUAAUA CA  A A
   ||||||||||||||||||||||||| ||  |
   ACGCAACGUUGCCUCUGUAUAUUAU GU  U A
AGC                         -  AU C
Stem-loop sequence AUGCGUUGCAACGGGGACAUAUAAUAUCACGAUAACUUAUGUAUUAUAUGUCUCCGUUGCAACGCACGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB169072.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||||||||||||||||||||||
targets:7   CCGUGCGUUGCAACGGAGACAUAU   30

0.0 Sequence 6736 from Patent EP2559767 NA coding protein psRNATarget
HI408611.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||||||||||||||||||||||
targets:7   CCGUGCGUUGCAACGGAGACAUAU   30

0.0 Sequence 6736 from Patent EP2074227 NA coding protein psRNATarget
LQ240741.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||||||||||||||||||||||
targets:7   CCGUGCGUUGCAACGGAGACAUAU   30

0.0 Sequence 6736 from Patent EP2985353 NA coding protein psRNATarget
JB163380.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  |||||||||||||||||*||||||
targets:20   UCGUGCGUUGCAACGGAAACAUAU   43

1.5 Sequence 1044 from Patent EP2559767 NA coding protein psRNATarget
LQ235049.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  |||||||||||||||||*||||||
targets:20   UCGUGCGUUGCAACGGAAACAUAU   43

1.5 Sequence 1044 from Patent EP2985353 NA coding protein psRNATarget
HI402919.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  |||||||||||||||||*||||||
targets:20   UCGUGCGUUGCAACGGAAACAUAU   43

1.5 Sequence 1044 from Patent EP2074227 NA coding protein psRNATarget
XM_020542748.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||||||||||||||=|||||||
targets:1126   CCGUGCGUUGCAACGGGGACAUAU   1149

1.5 PREDICTED: Zea mays pre-rRNA-processing protein TSR1 homolog (LOC103635667), mRNA NA coding protein psRNATarget
XM_020543351.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||||||||||||||=|||||||
targets:2204   CCGUGCGUUGCAACGGGGACAUAU   2227

1.5 PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA NA coding protein psRNATarget
EZ091398.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||||||||||||||*|||||||
targets:34   CCGUGCGUUGCAACGGUGACAUAU   57

1.5 TSA: Zea mays contig27046, mRNA sequence NA coding protein psRNATarget
XM_020552711.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*||||||
targets:929   CCGUGCGUUGCAACGGAAACAUAU   952

1.5 PREDICTED: Zea mays CRIB domain-containing protein RIC7 (LOC103654132), mRNA NA coding protein psRNATarget
AF162682.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*||||||
targets:1104   CCGUGCGUUGCAACGGAAACAUAU   1127

1.5 Zea mays mutant sh2-7527 alien mRNA sequence NA coding protein psRNATarget
EU976580.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||||||||||||*|||||||||
targets:1329   CCGUGCGUUGCAACAGAGACAUAU   1352

1.5 Zea mays clone 984060 zinc transporter 2 precursor, mRNA, complete cds NA coding protein psRNATarget
XM_008655083.2
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*||||||
targets:1388   CCGUGCGUUGCAACGGAAACAUAU   1411

1.5 PREDICTED: Zea mays putative protein TPRXL (LOC103633380), mRNA NA coding protein psRNATarget
EU960982.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*||||||
targets:1434   CCGUGCGUUGCAACGGAAACAUAU   1457

1.5 Zea mays clone 230135 gibberellin receptor GID1L2 mRNA, complete cds NA coding protein psRNATarget
NM_001155368.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*||||||
targets:1434   CCGUGCGUUGCAACGGAAACAUAU   1457

1.5 Zea mays gibberellin receptor GID1L2 (LOC100282458), mRNA NA coding protein psRNATarget
XM_020546475.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||||||||||||*|||||||||
targets:1245   CCGUGCGUUGCAACAGAGACAUAU   1268

1.5 PREDICTED: Zea mays uncharacterized LOC109943445 (LOC109943445), mRNA NA coding protein psRNATarget
NM_001158572.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*||||||
targets:1632   CCGUGCGUUGCAACGGAAACAUAU   1655

1.5 Zea mays Transcription factor bHLH7 (pco139297), mRNA NA coding protein psRNATarget
EU973411.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*||||||
targets:1632   CCGUGCGUUGCAACGGAAACAUAU   1655

1.5 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds NA coding protein psRNATarget
XM_020551947.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*|||||*
targets:260   CCGUGCGUUGCAACGGAAACAUAG   283

2.5 PREDICTED: Zea mays protein ABSCISIC ACID-INSENSITIVE 5-like (LOC109945634), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551948.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||||||||||*|||||*
targets:260   CCGUGCGUUGCAACGGAAACAUAG   283

2.5 PREDICTED: Zea mays protein ABSCISIC ACID-INSENSITIVE 5-like (LOC109945634), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001147764.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||*||||||||||||*||||||
targets:987   CCGUACGUUGCAACGGAAACAUAU   1010

1.5 Zea mays Ribosomal protein L13 family protein (pco101615), mRNA NA coding protein psRNATarget
BT040800.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||*||||||||||||*||||||
targets:987   CCGUACGUUGCAACGGAAACAUAU   1010

1.5 Zea mays full-length cDNA clone ZM_BFc0129O03 mRNA, complete cds NA coding protein psRNATarget
XM_008676484.2
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||*||||||||||*||||||||
targets:1023   CCGUACGUUGCAACGAAGACAUAU   1046

1.5 PREDICTED: Zea mays sialyltransferase-like protein 4 (LOC103650896), transcript variant X1, mRNA NA coding protein psRNATarget
AY105351.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||*||||||||||||*||||||
targets:997   CCGUACGUUGCAACGGAAACAUAU   1020

1.5 Zea mays PCO101615 mRNA sequence NA coding protein psRNATarget
XM_008676486.2
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||*||||||||||*||||||||
targets:1046   CCGUACGUUGCAACGAAGACAUAU   1069

1.5 PREDICTED: Zea mays sialyltransferase-like protein 4 (LOC103650896), transcript variant X2, mRNA NA coding protein psRNATarget
EU951734.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||*||||||||||||*||||||
targets:1297   CCGUACGUUGCAACGGAAACAUAU   1320

1.5 Zea mays clone 995709 mRNA sequence NA coding protein psRNATarget
BT070107.1
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *||||||||*||||||*|||||||
targets:476   CCGUGCGUUACAACGGUGACAUAU   499

2.5 Zea mays full-length cDNA clone ZM_BFb0384J11 mRNA, complete cds NA coding protein psRNATarget
XM_008656346.2
ncRNA:24   AGCACGCAACGUUGCCUCUGUAUA   1
  *|||*||||||||||||*||||||
targets:1566   CCGUACGUUGCAACGGAAACAUAU   1589

1.5 PREDICTED: Zea mays Ribosomal protein L13 family protein (pco101615), transcript variant X1, mRNA NA coding protein psRNATarget
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