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BaseInfo

ncRNA ID novel_zma_miR253
Species Zea mays
Class miRNA
Genome position Chr4:78160087-78160170 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089698;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - GUGGAUUGAGUGGGAUUGGAUGGA - 24
Stem-loop(if miRNA) --        AG          ----------------------------U    U
  GUGGAUUG  UGGGAUUGGA                             GGAU U
  ||||||||  ||||||||||                             ||||
  UAUCUAAC  ACCCUAACCU                             CCUA A
GG        CU          UUUUUAAUUCUUCUUCUAACUAAACGAAC    U
Stem-loop sequence GUGGAUUGAGUGGGAUUGGAUGGAUUUAUAUCCCAAGCAAAUCAAUCUUCUUCUUAAUUUUUUCCAAUCCCAUCCAAUCUAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405889.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

0.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

0.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100

0.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

0.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

0.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110

0.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

0.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

0.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119

0.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
EU951448.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:743   CCCAUCCAAUCCCACUCAAUCCAC   766

0.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:872   CCCAUCCAAUCCCACUCAAUCCAC   895

0.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:174   CCCAUCCAAUCCCACUCAAUCCAC   197

0.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:526   CCCAUCCAAUCCCACUCAAUCCAC   549

0.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551

0.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551

0.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
EU955633.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836

0.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836

0.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:2498   CCCAUCCAAUCCCACUCAAUCCAC   2521

0.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979

0.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979

0.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1079   CCCAUCCAAUCCCACUCAAUCCAC   1102

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:1227   CCCAUCCAAUCCCACUCAAUCCAC   1250

0.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||||||||||||||
targets:5802   CCCAUCCAAUCCCACUCAAUCCAC   5825

0.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
JB166354.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100

1.5 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100

1.5 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100

1.5 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

0.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

0.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||||||||||
targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101

0.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
HI403005.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||||||||||=
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

1.0 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
LQ235135.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||||||||||=
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

1.0 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
JB163466.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||||||||||=
targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119

1.0 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||||||||||
targets:118   CUCAUCCAAUCCCACUCAAUCCAC   141

0.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
EU942657.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||=|||||||||||
targets:233   CCCAUCCAAUCCUACUCAAUCCAC   256

1.5 Zea mays clone 1527578 mRNA sequence NA coding protein psRNATarget
BT086633.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:453   CCCAUCCAAUCUCACUCAAUCCAC   476

1.5 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||=||||||||||
targets:1126   CCCAUCCAAUCCCGCUCAAUCCAC   1149

1.5 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
BT068797.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||=||||||||||
targets:1126   CCCAUCCAAUCCCGCUCAAUCCAC   1149

1.5 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
EU949831.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||=|||||||||||
targets:1011   CCCAUCCAAUCCUACUCAAUCCAC   1034

1.5 Zea mays clone 447574 mRNA sequence NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||||||||||=
targets:1464   CCCAUCCAAUCCCACUCAAUCCAU   1487

1.0 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||||||||||=
targets:1464   CCCAUCCAAUCCCACUCAAUCCAU   1487

1.0 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
XM_008645912.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||=||||||||||
targets:1617   CCCAUCCAAUCCCGCUCAAUCCAC   1640

1.5 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664276.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||=||||||||||
targets:2045   CCCAUCCAAUCCCGCUCAAUCCAC   2068

1.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||=||||||||||
targets:2027   CCCAUCCAAUCCCGCUCAAUCCAC   2050

1.5 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
BT063416.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:2078   CCCAUCCAAUCUCACUCAAUCCAC   2101

1.5 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
XM_008664275.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||=||||||||||
targets:2138   CCCAUCCAAUCCCGCUCAAUCCAC   2161

1.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||||||||||
targets:2209   CUCAUCCAAUCCCACUCAAUCCAC   2232

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:2150   CCCAUCCAAUCUCACUCAAUCCAC   2173

1.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:2151   CCCAUCCAAUCUCACUCAAUCCAC   2174

1.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:2279   CCCAUCCAAUCUCACUCAAUCCAC   2302

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:2286   CCCAUCCAAUCUCACUCAAUCCAC   2309

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||=||||||||||||
targets:2346   CCCAUCCAAUCUCACUCAAUCCAC   2369

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||=||||||||||
targets:2798   CCCAUCCAAUCCCGCUCAAUCCAC   2821

1.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||=||||||||||
targets:2902   CCCAUCCAAUCCCGCUCAAUCCAC   2925

1.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666493.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||=|||||||||||
targets:3478   CCCAUCCAAUCCUACUCAAUCCAC   3501

1.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546709.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||=|||||||||||
targets:3464   CCCAUCCAAUCCUACUCAAUCCAC   3487

1.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008666491.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||=|||||||||||
targets:3746   CCCAUCCAAUCCUACUCAAUCCAC   3769

1.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666492.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||||||||=|||||||||||
targets:3751   CCCAUCCAAUCCUACUCAAUCCAC   3774

1.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||||||||=||||||||||||
targets:14   CUCAUCCAAUCUCACUCAAUCCAC   37

1.5 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||||||||=||||||||||||
targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108

1.5 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
HI405877.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||||||||=||||||||||||
targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108

1.5 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
JB166338.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||||||||=||||||||||||
targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108

1.5 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
JB163481.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||=||||||||||||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.0 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
HI403020.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||=||||||||||||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.0 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
LQ235150.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||=||||||||||||||||||
targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119

1.0 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
LQ235149.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||=|||||||
targets:96   CUCAUCCAAUCCCACUUAAUCCAC   119

1.5 Sequence 1144 from Patent EP2985353 NA coding protein psRNATarget
HI403019.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||=|||||||
targets:96   CUCAUCCAAUCCCACUUAAUCCAC   119

1.5 Sequence 1144 from Patent EP2074227 NA coding protein psRNATarget
JB163480.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||=|||||||
targets:96   CUCAUCCAAUCCCACUUAAUCCAC   119

1.5 Sequence 1144 from Patent EP2559767 NA coding protein psRNATarget
EU942673.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||=||||||||||||||||||
targets:89   CUCAUUCAAUCCCACUCAAUCCAC   112

1.0 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
BT062183.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||||||||=||||||||||||
targets:244   CUCAUCCAAUCUCACUCAAUCCAC   267

1.5 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||=||||||||||||||||||
targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145

1.0 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT041052.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||=||||||||||||||||||
targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145

1.0 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
BT066987.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||=||||||||||||||||||
targets:1413   CUCAUUCAAUCCCACUCAAUCCAC   1436

1.0 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
XM_020539703.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|=||||||||||=||||||||||
targets:58   CCUAUCCAAUCCCGCUCAAUCCAC   81

1.5 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657579.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||=|||||||
targets:7143   CUCAUCCAAUCCCACUUAAUCCAC   7166

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008657578.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||=|||||||
targets:7247   CUCAUCCAAUCCCACUUAAUCCAC   7270

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542399.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||||||||||||=|||||||
targets:7258   CUCAUCCAAUCCCACUUAAUCCAC   7281

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA NA coding protein psRNATarget
HI403090.1
ncRNA:24   AGGU-AGGUUAGGGUGAGUUAGGUG   1
  *|||-||||||||||||||||||||
targets:95   ACCAAUCCAAUCCCACUCAAUCCAC   119

0.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AGGU-AGGUUAGGGUGAGUUAGGUG   1
  *|||-||||||||||||||||||||
targets:95   ACCAAUCCAAUCCCACUCAAUCCAC   119

0.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AGGU-AGGUUAGGGUGAGUUAGGUG   1
  *|||-||||||||||||||||||||
targets:95   ACCAAUCCAAUCCCACUCAAUCCAC   119

0.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
HI409272.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||*||||||||
targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95

1.5 Sequence 7397 from Patent EP2074227 NA coding protein psRNATarget
JB169733.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||*||||||||
targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95

1.5 Sequence 7397 from Patent EP2559767 NA coding protein psRNATarget
LQ241402.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||*||||||||
targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95

1.5 Sequence 7397 from Patent EP2985353 NA coding protein psRNATarget
XM_008678390.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||*||||||||
targets:1809   CCCAUCCAAUCCCACCCAAUCCAC   1832

1.5 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008678388.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||||||||||||||*||||||||
targets:1825   CCCAUCCAAUCCCACCCAAUCCAC   1848

1.5 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||=||||=||||||||||||
targets:3392   CUCAUCUAAUCUCACUCAAUCCAC   3415

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||=||||=||||||||||||
targets:3405   CUCAUCUAAUCUCACUCAAUCCAC   3428

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||=||||=||||||||||||
targets:3436   CUCAUCUAAUCUCACUCAAUCCAC   3459

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553538.1
ncRNA:24   AGGU-AGGUUAGGGUGAGUUAGGUG   1
  *|||-|||||||||=||||||||||
targets:1883   ACCAAUCCAAUCCCGCUCAAUCCAC   1907

1.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:24   AGGU-AGGUUAGGGUGAGUUAGGUG   1
  *|||-|||||||||=||||||||||
targets:1949   ACCAAUCCAAUCCCGCUCAAUCCAC   1973

1.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **=||||||||=||||||||||||
targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112

1.5 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
JB166339.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **=||||||||=||||||||||||
targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112

1.5 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **=||||||||=||||||||||||
targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112

1.5 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
BT069961.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **||||||||||||||||||=||=
targets:108   CACAUCCAAUCCCACUCAAUUCAU   131

2.5 Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds NA coding protein psRNATarget
BT042044.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **||||=||||||||||||||||=
targets:1363   CACAUCUAAUCCCACUCAAUCCAU   1386

2.0 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
XM_008669549.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **||||=||||||||||||||||=
targets:2080   CACAUCUAAUCCCACUCAAUCCAU   2103

2.0 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661613.2
ncRNA:24   AGGU-AGGUUAGGGUGAGUUAGGUG   1
  ||||-|||||||||*||||||||||
targets:3041   UCCACUCCAAUCCCUCUCAAUCCAC   3065

1.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008661611.2
ncRNA:24   AGGU-AGGUUAGGGUGAGUUAGGUG   1
  ||||-|||||||||*||||||||||
targets:3046   UCCACUCCAAUCCCUCUCAAUCCAC   3070

1.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA NA coding protein psRNATarget
EZ064093.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||*||||||||||||||||||=
targets:186   CCCACCCAAUCCCACUCAAUCCAU   209

1.0 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
XM_008659614.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=|||||||||||||*||||||||
targets:183   CUCAUCCAAUCCCACACAAUCCAC   206

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA NA coding protein psRNATarget
XM_020552750.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|||||=||||||*||||||||||
targets:140   CCCAUCUAAUCCCUCUCAAUCCAC   163

2.5 PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA NA coding protein psRNATarget
JB169468.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||*||||||||||||||||||=
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

1.0 Sequence 7132 from Patent EP2559767 NA coding protein psRNATarget
HI409007.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||*||||||||||||||||||=
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

1.0 Sequence 7132 from Patent EP2074227 NA coding protein psRNATarget
LQ241137.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||*||||||||||||||||||=
targets:71   CUCACCCAAUCCCACUCAAUCCAU   94

1.0 Sequence 7132 from Patent EP2985353 NA coding protein psRNATarget
XM_008667120.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *|=|||*|||||||||||||=|||
targets:946   CCUAUCAAAUCCCACUCAAUUCAC   969

2.5 PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA NA coding protein psRNATarget
BT066441.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||||=||||||||*||||||||
targets:1525   CUCAUCUAAUCCCACCCAAUCCAC   1548

2.5 Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds NA coding protein psRNATarget
JB166342.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  |==*||||||||||=||||||||=
targets:88   UUUUUCCAAUCCCAUUCAAUCCAU   111

2.5 Sequence 4006 from Patent EP2559767 NA coding protein psRNATarget
LQ238011.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  |==*||||||||||=||||||||=
targets:88   UUUUUCCAAUCCCAUUCAAUCCAU   111

2.5 Sequence 4006 from Patent EP2985353 NA coding protein psRNATarget
HI405881.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  |==*||||||||||=||||||||=
targets:88   UUUUUCCAAUCCCAUUCAAUCCAU   111

2.5 Sequence 4006 from Patent EP2074227 NA coding protein psRNATarget
HI405833.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  |==*||||||||||=||||||||=
targets:89   UUUUUCCAAUCCCAUUCAAUCCAU   112

2.5 Sequence 3958 from Patent EP2074227 NA coding protein psRNATarget
LQ237963.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  |==*||||||||||=||||||||=
targets:89   UUUUUCCAAUCCCAUUCAAUCCAU   112

2.5 Sequence 3958 from Patent EP2985353 NA coding protein psRNATarget
JB166294.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  |==*||||||||||=||||||||=
targets:89   UUUUUCCAAUCCCAUUCAAUCCAU   112

2.5 Sequence 3958 from Patent EP2559767 NA coding protein psRNATarget
EU944907.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  |==*||||||||||=||||||||=
targets:338   UUUUUCCAAUCCCAUUCAAUCCAU   361

2.5 Zea mays clone 235115 mRNA sequence NA coding protein psRNATarget
XM_008675817.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  ||*|*=||||||||||||||||||
targets:4055   UCGACUCAAUCCCACUCAAUCCAC   4078

1.0 PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA NA coding protein psRNATarget
BT061560.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||*=|||||=||||||||||||
targets:1441   CUCACUCAAUCUCACUCAAUCCAC   1464

2.5 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *=||*=|||||=||||||||||||
targets:1441   CUCACUCAAUCUCACUCAAUCCAC   1464

2.5 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
XM_020552749.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||*|||||||||*||||||||||
targets:3274   CCCCUCCAAUCCCCCUCAAUCCAC   3297

1.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
NM_001176181.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||*|||||||||*||||||||||
targets:1595   CCCCUCCAAUCCCCCUCAAUCCAC   1618

1.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||*|||||||||*||||||||||
targets:1595   CCCCUCCAAUCCCCCUCAAUCCAC   1618

1.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
EZ082720.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  ***=|==|||||||||||||||||
targets:66   AGGGUUUAAUCCCACUCAAUCCAC   89

2.0 TSA: Zea mays contig18363, mRNA sequence NA coding protein psRNATarget
BT066485.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  ***=|==|||||||||||||||||
targets:70   AGGGUUUAAUCCCACUCAAUCCAC   93

2.0 Zea mays full-length cDNA clone ZM_BFb0006P05 mRNA, complete cds NA coding protein psRNATarget
EU948930.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **||*|||||=||||||||||=||
targets:418   CGCACCCAAUUCCACUCAAUCUAC   441

2.5 Zea mays clone 390579 mRNA sequence NA coding protein psRNATarget
BT055408.1
ncRNA:24   AGGUAGG-UUAGGGUGAGUUAGGUG   1
  |*|||||-||*||||||||||||||
targets:801   UACAUCCUAAACCCACUCAAUCCAC   825

3.0 Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds NA coding protein psRNATarget
NM_001152975.1
ncRNA:24   AGGUAGG-UUAGGGUGAGUUAGGUG   1
  |*|||||-||*||||||||||||||
targets:801   UACAUCCUAAACCCACUCAAUCCAC   825

3.0 Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA NA coding protein psRNATarget
XM_008649521.2
ncRNA:24   AGGUAGG-UUAGGGUGAGUUAGGUG   1
  |*|||||-||*||||||||||||||
targets:853   UACAUCCUAAACCCACUCAAUCCAC   877

3.0 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649520.2
ncRNA:24   AGGUAGG-UUAGGGUGAGUUAGGUG   1
  |*|||||-||*||||||||||||||
targets:882   UACAUCCUAAACCCACUCAAUCCAC   906

3.0 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546135.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **||*|||||=||||||||||=||
targets:3130   CGCACCCAAUUCCACUCAAUCUAC   3153

2.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546136.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  **||*|||||=||||||||||=||
targets:3277   CGCACCCAAUUCCACUCAAUCUAC   3300

2.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548160.1
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||*||||||=||*||||||||||
targets:4911   CCCCUCCAAUUCCUCUCAAUCCAC   4934

2.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008670752.2
ncRNA:24   AGGUAGGUUAGGGUGAGUUAGGUG   1
  *||*||||||=||*||||||||||
targets:5138   CCCCUCCAAUUCCUCUCAAUCCAC   5161

2.5 PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA NA coding protein psRNATarget
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