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BaseInfo

ncRNA ID	novel_zma_miR250
Species	Zea mays
Class	miRNA
Genome position	Chr4:48904559-48904765 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - UCAUGAUAUCAUAUGUAGAGGCUC - 24
Stem-loop(if miRNA)	--   U             G               A    C G        A   G                       C      GUCCUUC    -   AUCA   UCA GAUAUCAUAUGUA AGGCUCUGAUAAAAA UUGG A UGUUUCGU AAA UUGUCACAUAUUAUGUGUGGAAA CUAGUC       GCAU GAA    U   ||| ||||||||||||| ||||||||||||||| |||| | |||||||| ||| ||||||||||||||||||||||| ||||||       |||| |||   AGU CUAUAGUAUAUAU UCUGAGACUAUUUUU AACU U ACAAAGCA UUU AACAGUGUGUGAUAUACAUCUUU GAUCGG       UGUA CUU    A AC   U             A               A    C G        C   A                       C      --ACACA    A   CAAG
Stem-loop sequence	UCAUGAUAUCAUAUGUAGAGGCUCUGAUAAAAAAUUGGCAGUGUUUCGUAAAAGUUGUCACAUAUUAUGUGUGGAAACCUAGUCGUCCUUCGCAUGAAAUCAUAGAACUUCAAUGUACACAGGCUAGCUUUCUACAUAUAGUGUGUGACAAAUUUCACGAAACAGUCUCAAAUUUUUAUCAGAGUCUAUAUAUAUGAUAUCUUGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ089840.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *||||||||||||||||||||||= targets:2   CAGCCUCUACAUAUGAUAUCAUGG   25 Target Full Sequence	1.0	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|||||||||||||||||||||** targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229 Target Full Sequence	2.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|||||||||||||||||||||** targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229 Target Full Sequence	2.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|||||||||||||||||||||** targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229 Target Full Sequence	2.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*||||||=|||||||||||||| targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*||||||=|||||||||||||| targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*||||||=|||||||||||||| targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *||=|*|||||||||||||||||| targets:4025   UAGUCGCUACAUAUGAUAUCAUGA   4048 Target Full Sequence	1.0	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*|||*||||||||||||||||| targets:200   CAACCUGUACAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*|||*||||||||||||||||| targets:200   CAACCUGUACAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*|||*||||||||||||||||| targets:200   CAACCUGUACAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget