Search result

BaseInfo

ncRNA ID osa-miR2880
Species Oryza sativa
Class miRNA
Genome position Chr3:22741618-22741797 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - ACGGUAUCCCGUUCGGACAGGAUG - 34
Stem-loop(if miRNA)        A       A            A       A C  A         U         AG  ---------AU      ACCUAGUAGGUA
AUGCUAC GGACGGU UCCCGUUCGGAC GGAUGAU C UC GAGGUAUCG CUGAUACCC  GU           GCCAAU            U
||||||| ||||||| |||||||||||| ||||||| | || ||||||||| |||||||||  ||           ||||||            U
UACGAUG CCUGCCA AGGGCAAGUCUG CCUACUA G AG UUCCAUAGC GACUAUGGG  CA           CUAUGG            G
       C       A            C       - U  A         C         -G  AACCUGUACUA      AGUUCCAUAGCG
Stem-loop sequence AUGCUACAGGACGGUAUCCCGUUCGGACAGGAUGAUACCUCAGAGGUAUCGUCUGAUACCCAGGUAUGCCAAUACCUAGUAGGUAUUGGCGAUACCUUGAGGUAUCAUCAUGUCCAAACGGGGUAUCAGCCGAUACCUUAGAUGAUCAUCCCGUCUGAACGGGAAACCGUCCCGUAGCAU

Reference

1 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).