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BaseInfo

ncRNA ID	novel_zma_miR244
Species	Zea mays
Class	miRNA
Genome position	Chr4:28030430-28030513 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089698;SRR2089699
Length	21
Mature sequence(if miRNA)	64 - AUGGAAGGGAUUGAGGGGGCU - 84
Stem-loop(if miRNA)	--     AG        G                       A   AUGGA  GGAUUGAG GGGCUAGAAUCCCUCACUAUUUA A   |||||  |||||||| |||||||||||||||||||||||   UAUCU  CCUAGCUC CCCGAUUUUAGGGAGUGAUGAGU A AU     CA        A                       U
Stem-loop sequence	AUGGAAGGGAUUGAGGGGGCUAGAAUCCCUCACUAUUUAAAAUUGAGUAGUGAGGGAUUUUAGCCCACUCGAUCCACUCUAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY108800.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   |||||=|||||||||*||||| targets:781   AGCCCUCUCAAUCCCCUCCAU   801 Target Full Sequence	2.5	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget
XM_008645760.2	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   |||||=|||||||||*||||| targets:1468   AGCCCUCUCAAUCCCCUCCAU   1488 Target Full Sequence	2.5	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   |||=|||||||||||*||||| targets:1673   AGCUCCCUCAAUCCCCUCCAU   1693 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   |||||||||||||||*||||* targets:9   AGCCCCCUCAAUCCCCUCCAG   29 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
EZ112420.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   =|||||*||*||||||||||| targets:66   GGCCCCGUCCAUCCCUUCCAU   86 Target Full Sequence	2.5	TSA: Zea mays contig48081, mRNA sequence	NA	coding protein	psRNATarget
NM_001158605.2	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   =|||||*||*||||||||||| targets:97   GGCCCCGUCCAUCCCUUCCAU   117 Target Full Sequence	2.5	Zea mays OHP2 (pco066337a), mRNA	NA	coding protein	psRNATarget
EU973539.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   =|||||*||*||||||||||| targets:80   GGCCCCGUCCAUCCCUUCCAU   100 Target Full Sequence	2.5	Zea mays clone 400607 OHP2 mRNA, complete cds	NA	coding protein	psRNATarget
EU961048.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   =|||||*||*||||||||||| targets:81   GGCCCCGUCCAUCCCUUCCAU   101 Target Full Sequence	2.5	Zea mays clone 230701 OHP2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155387.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   =|||||*||*||||||||||| targets:81   GGCCCCGUCCAUCCCUUCCAU   101 Target Full Sequence	2.5	Zea mays OHP2 (cl25234_-2a), mRNA	NA	coding protein	psRNATarget
DQ244155.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   =|||||*||*||||||||||| targets:112   GGCCCCGUCCAUCCCUUCCAU   132 Target Full Sequence	2.5	Zea mays clone 2622 mRNA sequence	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   |*|||||||||||||*||||* targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   |*|||||||||||||*||||* targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   |*|||||||||||||*||||* targets:31   AUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008660850.2	ncRNA:21   UCGGGGGAGUUAGGGAAGGUA   1   *||||*|||||*||||||||| targets:129   CGCCCGCUCAAGCCCUUCCAU   149 Target Full Sequence	2.5	PREDICTED: Zea mays protein NLRC3 (LOC103637804), transcript variant X1, mRNA	NA	coding protein	psRNATarget