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BaseInfo

ncRNA ID	novel_zma_miR242
Species	Zea mays
Class	miRNA
Genome position	Chr4:36535059-36535124 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089715;SRR2287159;SRR2287160;SRR2287163;SRR2287165;SRR2089699;SRR2089705;SRR2089706;SRR2089708
Length	21
Mature sequence(if miRNA)	46 - CCGGAGGGAUUGGAGGGGCUA - 66
Stem-loop(if miRNA)	--                  C    AUCCCAUU   CCGGAGGGAUUGGAGGGG UAAA        C   |||||||||||||||||| ||||        U   GGCCUCCCUAAUCUCCCC AUUU        U CC                  -    AAAACUUA
Stem-loop sequence	CCGGAGGGAUUGGAGGGGCUAAAAUCCCAUUCUUAUUCAAAAUUUACCCCUCUAAUCCCUCCGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235519.1	ncRNA:21   AUCGGGGAGGUUA-GGGAGGCC   1   |||||||||||||-|||||||| targets:74   UAGCCCCUCCAAUUCCCUCCGG   95 Target Full Sequence	3.0	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI403389.1	ncRNA:21   AUCGGGGAGGUUA-GGGAGGCC   1   |||||||||||||-|||||||| targets:74   UAGCCCCUCCAAUUCCCUCCGG   95 Target Full Sequence	3.0	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
JB163850.1	ncRNA:21   AUCGGGGAGGUUA-GGGAGGCC   1   |||||||||||||-|||||||| targets:74   UAGCCCCUCCAAUUCCCUCCGG   95 Target Full Sequence	3.0	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:21   AUCGGGGAGGUUAGG-GAGGCC   1   |||||||||||||||-|||||| targets:218   UAGCCCCUCCAAUCCACUCCGG   239 Target Full Sequence	3.0	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AUCGGGGAGGUUAGGG-AGGCC   1   ||||||||||||||||-||||| targets:3500   UAGCCCCUCCAAUCCCCUCCGG   3521 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AUCGGGGAGGUUAGGG-AGGCC   1   ||||||||||||||||-||||| targets:3535   UAGCCCCUCCAAUCCCCUCCGG   3556 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY111670.1	ncRNA:21   AUCGGGGAGGUUAGGGAGGCC   1   *|*=||||||||||||||||| targets:15   AACUCCCUCCAAUCCCUCCGG   35 Target Full Sequence	2.0	Zea mays CL20712_1 mRNA sequence	NA	coding protein	psRNATarget
EZ079650.1	ncRNA:21   AUCGGGGAGGUUAGGGAGGCC   1   *=|||=||||||||||||*|| targets:32   GGGCCUCUCCAAUCCCUCAGG   52 Target Full Sequence	2.5	TSA: Zea mays contig15289, mRNA sequence	NA	coding protein	psRNATarget