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BaseInfo

ncRNA ID	novel_zma_miR241
Species	Zea mays
Class	miRNA
Genome position	Chr4:43925535-43925587 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089713
Length	24
Mature sequence(if miRNA)	1 - CCGGACUGUCCGGUGUACCAGGGA - 24
Stem-loop(if miRNA)	-- G   A     A   U           C UGG GCACC GAC GUCCGGUGG   | ||| ||||| ||| ||||||||C   G ACC UGUGG CUG CAGGCCACA AG G   A     C   U
Stem-loop sequence	CGUGGAGCACCAGACUGUCCGGUGGCACACCGGACUGUCCGGUGUACCAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241540.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ||||||||=||||||||||||||| targets:90   UCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	1.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   AGG-GACCAUGUGGCCUGUCAGGCC   1   |||-||||*|||||||||||||||| targets:8   UCCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	1.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ||||||||=||||||||||||||| targets:90   UCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	1.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   AGG-GACCAUGUGGCCUGUCAGGCC   1   |||-||||*|||||||||||||||| targets:8   UCCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	1.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ||||||||=||||||||||||||| targets:90   UCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	1.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   AGG-GACCAUGUGGCCUGUCAGGCC   1   |||-||||*|||||||||||||||| targets:8   UCCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	1.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|||||||=||||||||||||||| targets:760   GCCCUGGUGCACCGGACAGUCCGG   783 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|**||*|*||||||||||||||| targets:679   CCGGUGCUUCACCGGACAGUCCGG   702 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AGG-GACCAUGUGGCCUGUCAGGCC   1   |||-||||*|||||||||||||||| targets:693   UCCGCUGGCACACCGGACAGUCCGG   717 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AGGG-ACCAUGUGGCCUGUCAGGCC   1   ||*|-|||*=||||||||||||||| targets:471   UCGCAUGGCGCACCGGACAGUCCGG   495 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|**|||*|||||||||||||||| targets:796   CCGGUGGCACACCGGACAGUCCGG   819 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   AGG-GACCAUGUGGCCUGUCAGGCC   1   |||-|||||=||||||||||||||| targets:819   UCCGCUGGUGCACCGGACAGUCCGG   843 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ***=*|||=||||||||||||||| targets:586   CGAUGGGUGCACCGGACAGUCCGG   609 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   AGG-GACCAUGUGGCCUGUCAGGCC   1   |||-|||||=||||||||||||||| targets:819   UCCGCUGGUGCACCGGACAGUCCGG   843 Target Full Sequence	1.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ***=*|||=||||||||||||||| targets:586   CGAUGGGUGCACCGGACAGUCCGG   609 Target Full Sequence	1.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   **||||||=||||||||||||||| targets:827   AGCCUGGUGCACCGGACAGUCCGG   850 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AGGG------ACCAUGUGGCCUGUCAGGCC   1   |=|=------||||=||||||||||||=|| targets:398   UUCUGUCGAGUGGUGCACCGGACAGUCUGG   427 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|**|||*|||||||||||||||| targets:93   CCGGUGGCACACCGGACAGUCCGG   116 Target Full Sequence	1.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
LQ241787.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|**|||*||||||||||*||||| targets:33   CCGGUGGCACACCGGACAAUCCGG   56 Target Full Sequence	2.5	Sequence 7782 from Patent EP2985353	NA	coding protein	psRNATarget
JB170118.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|**|||*||||||||||*||||| targets:33   CCGGUGGCACACCGGACAAUCCGG   56 Target Full Sequence	2.5	Sequence 7782 from Patent EP2559767	NA	coding protein	psRNATarget
HI409657.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|**|||*||||||||||*||||| targets:33   CCGGUGGCACACCGGACAAUCCGG   56 Target Full Sequence	2.5	Sequence 7782 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-||||||=||||*|||||||||| targets:493   UCGCCUGGUGCACCUGACAGUCCGG   517 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-||||||=||||*|||||||||| targets:493   UCGCCUGGUGCACCUGACAGUCCGG   517 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-|||||*=||||||||||||||| targets:501   UCGCCUGGCGCACCGGACAGUCCGG   525 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:712   UCC--GGUGCACACCGGACAGUCCGG   735 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|*=|||*=||||||||||||||| targets:598   ACGUUGGCGCACCGGACAGUCCGG   621 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-|||||*=||||||||||||||| targets:501   UCGCCUGGCGCACCGGACAGUCCGG   525 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:712   UCC--GGUGCACACCGGACAGUCCGG   735 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   *|*=|||*=||||||||||||||| targets:598   ACGUUGGCGCACCGGACAGUCCGG   621 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   AGGG------ACCAUGUGGCCUGUCAGGCC   1   |=|=------||||=||||||||||||||| targets:140   UUCUGUCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	1.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   AGGG------ACCAUGUGGCCUGUCAGGCC   1   |=|=------||||=||||||||||||||| targets:140   UUCUGUCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	1.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   AGGG------ACCAUGUGGCCUGUCAGGCC   1   |=|=------||||=||||||||||||||| targets:140   UUCUGUCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	1.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   AGGG-ACCAUGUGGCCUGUCAGGCC   1   *|||-|||*|||||||||||||||| targets:1377   GCCCGUGGCACACCGGACAGUCCGG   1401 Target Full Sequence	1.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   |||***|*|||||||||||||||| targets:1397   UCCGGUGCACACCGGACAGUCCGG   1420 Target Full Sequence	2.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-=||||*=||||||||||||||| targets:372   UCGUCUGGCGCACCGGACAGUCCGG   396 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:468   UCC--GGUGCACACCGGACAGUCCGG   491 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:598   UCC--GGUGCACACCGGACAGUCCGG   621 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-=|*|||=||||||||||||||| targets:582   UCGUCGGGUGCACCGGACAGUCCGG   606 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *|||--|||*|||||||||||||||| targets:719   GCCCGUUGGCACACCGGACAGUCCGG   744 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   |||***|*|||||||||||||||| targets:740   UCCGGUGCACACCGGACAGUCCGG   763 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   **|||||*=||||||||||||||| targets:777   AGCCUGGCGCACCGGACAGUCCGG   800 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   AGGG------ACCAUGUGGCCUGUCAGGCC   1   |=|=------|||*=||||||||||||||| targets:482   UUCUGUCGAGUGGCGCACCGGACAGUCCGG   511 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   **|||||*=||||||||||||||| targets:777   AGCCUGGCGCACCGGACAGUCCGG   800 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   AGGG------ACCAUGUGGCCUGUCAGGCC   1   |=|=------|||*=||||||||||||||| targets:482   UUCUGUCGAGUGGCGCACCGGACAGUCCGG   511 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-=|*|||=||||||||||||||| targets:134   UCGUCGGGUGCACCGGACAGUCCGG   158 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:281   UCC--GGUGCACACCGGACAGUCCGG   304 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:24   AGGGAC-CAUGUGGCCUGUCAGGCC   1   *=||*|-|||||||||||||||||| targets:27   GUCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
HI409351.1	ncRNA:24   AGGGAC-CAUGUGGCCUGUCAGGCC   1   *=||*|-|||||||||||||||||| targets:27   GUCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
JB169812.1	ncRNA:24   AGGGAC-CAUGUGGCCUGUCAGGCC   1   *=||*|-|||||||||||||||||| targets:27   GUCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:407   UCC--GGUGCACACCGGACAGUCCGG   430 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AGGG------ACCAUGUGGCCUGUCAGGCC   1   |=|=------|||*=||||||||||||||| targets:171   UUCUGUCGGGUGGAGCACCGGACAGUCCGG   200 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |*=**|||--|||||||||||||||| targets:291   UGUACGGUGCACACCGGACAGUCCGG   316 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
JB170509.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:107   UCC--GGUGCACACCGGACAGUCCGG   130 Target Full Sequence	2.5	Sequence 8173 from Patent EP2559767	NA	coding protein	psRNATarget
HI410048.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:107   UCC--GGUGCACACCGGACAGUCCGG   130 Target Full Sequence	2.5	Sequence 8173 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242178.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:107   UCC--GGUGCACACCGGACAGUCCGG   130 Target Full Sequence	2.5	Sequence 8173 from Patent EP2985353	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   **=||||*=||||||||||||||| targets:578   GAUCUGGCGCACCGGACAGUCCGG   601 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:695   UCC--GGUGCACACCGGACAGUCCGG   718 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-=|*||*=||||||||||||||| targets:481   UCAUCGGGCGCACCGGACAGUCCGG   505 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   |||***|*|||||||||||||||| targets:597   UCCGGUGCACACCGGACAGUCCGG   620 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   **=||||*=||||||||||||||| targets:578   GAUCUGGCGCACCGGACAGUCCGG   601 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:695   UCC--GGUGCACACCGGACAGUCCGG   718 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-=|*||*=||||||||||||||| targets:481   UCAUCGGGCGCACCGGACAGUCCGG   505 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   |||***|*|||||||||||||||| targets:597   UCCGGUGCACACCGGACAGUCCGG   620 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:620   UCC--GGUGCACACCGGACAGUCCGG   643 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:734   UCC--GGUGCACACCGGACAGUCCGG   757 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:837   UCC--GGUGCACACCGGACAGUCCGG   860 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-=|*||*=||||||||||||||| targets:493   UCGUCGGGCGCACCGGACAGUCCGG   517 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:620   UCC--GGUGCACACCGGACAGUCCGG   643 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:734   UCC--GGUGCACACCGGACAGUCCGG   757 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:837   UCC--GGUGCACACCGGACAGUCCGG   860 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-=|*||*=||||||||||||||| targets:493   UCGUCGGGCGCACCGGACAGUCCGG   517 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ****||||=||||||||=|||||| targets:931   CAAAUGGUGCACCGGACGGUCCGG   954 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ****||||=||||||||=|||||| targets:1302   CAAAUGGUGCACCGGACGGUCCGG   1325 Target Full Sequence	2.5	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:445   UCC--GGUGCACACCGGACAGUCCGG   468 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:559   UCC--GGUGCACACCGGACAGUCCGG   582 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:445   UCC--GGUGCACACCGGACAGUCCGG   468 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:559   UCC--GGUGCACACCGGACAGUCCGG   582 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   AGG-----GACCAUGUGGCCUGUCAGGCC   1   ||=-----||||*=||||||||||||||| targets:2532   UCUGUCGACUGGCGCACCGGACAGUCCGG   2560 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:4492   UCC--GGUGCACACCGGACAGUCCGG   4515 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   AGGGACCA--UGUGGCCUGUCAGGCC   1   |||--|||--|||||||||||||||| targets:4607   UCC--GGUGCACACCGGACAGUCCGG   4630 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   AG-GGACCAUGUGGCCUGUCAGGCC   1   ||-=|*||*=||||||||||||||| targets:4375   UCAUCGGGCGCACCGGACAGUCCGG   4399 Target Full Sequence	2.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
EU950973.1	ncRNA:24   AGGGAC-CAUGUGGCCUGUCAGGCC   1   *=||*|-||=||||||||||||||| targets:179   GUCCGGUGUGCACCGGACAGUCCGG   203 Target Full Sequence	3.0	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
EZ071967.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:45   GUCCGGUGGUGCACCGGACUGUCCGG   70 Target Full Sequence	2.5	TSA: Zea mays contig07604, mRNA sequence	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   AGGG-ACCAUGUGGCCUGUCAGGCC   1   ||*|-|||*=||||||||||||||| targets:87   UCGCAUGGCGCACCGGACAGUCCGG   111 Target Full Sequence	2.0	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
EZ105730.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:57   GUCCGGUGGUGCACCGGACUGUCCGG   82 Target Full Sequence	2.5	TSA: Zea mays contig41388, mRNA sequence	NA	coding protein	psRNATarget
BT037301.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:976   GUCCGGUGGUGCACCGGACUGUCCGG   1001 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds	NA	coding protein	psRNATarget
JB170455.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:106   GUCCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	2.5	Sequence 8119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242124.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:106   GUCCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	2.5	Sequence 8119 from Patent EP2985353	NA	coding protein	psRNATarget
HI409994.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:106   GUCCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	2.5	Sequence 8119 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001309905.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:1148   GUCCGGUGGUGCACCGGACUGUCCGG   1173 Target Full Sequence	2.5	Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA	NA	coding protein	psRNATarget
EU960150.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:1318   GUCCGGUGGUGCACCGGACUGUCCGG   1343 Target Full Sequence	2.5	Zea mays clone 222169 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ109324.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:31   GUCCGGUGGUGCACCGGACUGUCCGG   56 Target Full Sequence	2.5	TSA: Zea mays contig44983, mRNA sequence	NA	coding protein	psRNATarget
BT064005.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:1407   GUCCGGUGGUGCACCGGACUGUCCGG   1432 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175099.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:1407   GUCCGGUGGUGCACCGGACUGUCCGG   1432 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA	NA	coding protein	psRNATarget
EU962912.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:418   GUCCGGUGGUGCACCGGACUGUCCGG   443 Target Full Sequence	2.5	Zea mays clone 246496 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065862.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:1286   GUCCGGUGGUGCACCGGACUGUCCGG   1311 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175661.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=||--||||=||||||||*|||||| targets:1286   GUCCGGUGGUGCACCGGACUGUCCGG   1311 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA	NA	coding protein	psRNATarget
HI409732.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   **=||||*|||||||||*|||||| targets:9   AGUCUGGCACACCGGACUGUCCGG   32 Target Full Sequence	2.5	Sequence 7857 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241862.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   **=||||*|||||||||*|||||| targets:9   AGUCUGGCACACCGGACUGUCCGG   32 Target Full Sequence	2.5	Sequence 7857 from Patent EP2985353	NA	coding protein	psRNATarget
JB170193.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   **=||||*|||||||||*|||||| targets:9   AGUCUGGCACACCGGACUGUCCGG   32 Target Full Sequence	2.5	Sequence 7857 from Patent EP2559767	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   AGG-GACCAUGUGGCCUGUCAGGCC   1   *||-=|||**||||||||||||||| targets:703   GCCGUUGGCUCACCGGACAGUCCGG   727 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152406.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ||**||||=||||||||*|||||| targets:1558   UCGGUGGUGCACCGGACUGUCCGG   1581 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA	NA	coding protein	psRNATarget
BT054171.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   ||**||||=||||||||*|||||| targets:1558   UCGGUGGUGCACCGGACUGUCCGG   1581 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:20   ACCAUGUGGCCUGUCAGGCC   1   |||*=||||||||||||||| targets:1   UGGCGCACCGGACAGUCCGG   20 Target Full Sequence	2.0	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
EU943461.1	ncRNA:24   AGGG--ACCAUGUGGCCUGUCAGGCC   1   *=|=--||||=||||||||*|||||| targets:1392   GUCUGGUGGUGCACCGGACUGUCCGG   1417 Target Full Sequence	2.5	Zea mays clone 1624403 mRNA sequence	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   AGGGACCAUGUGGCCUGUCAGGCC   1   |=**|||*=||||||||||||||| targets:172   UUGAUGGCGCACCGGACAGUCCGG   195 Target Full Sequence	2.0	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget