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BaseInfo

ncRNA ID novel_zma_miR240
Species Zea mays
Class miRNA
Genome position Chr4:48720905-48721036 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287159;SRR2287160;SRR2287163;SRR1997865;SRR5451004;SRR5451006;SRR1997866;SRR2089699;SRR2089700;SRR2089701;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 109 - AAGGCCUGUUUGGUUUGUGGCUAA - 132
Stem-loop(if miRNA) --               UG G   AAAUG                -------------        CG   G
  AAGGCCUGUUUGGUU  U GCU     UGCCACACUUUGCCUA             AGGUUAGU  UUC A
  |||||||||||||||  | |||     ||||||||||||||||             ||||||||  ||| A
  UUCCGGACAAACCAA  G UGG     ACGGUGUGAAACGGAU             UCCAAUCA  AAG U
AA               GU A   AGUCA                UGAAAAGACGGAU        AU   U
Stem-loop sequence AAGGCCUGUUUGGUUUGUGGCUAAAUGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAACUGAGGUAGUGAACCAAACAGGCCUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU945170.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||||||||||||||||||
targets:943   UUAGCCACAAACCAAACAGGCCUU   966

0.0 Zea mays clone 243250 mRNA sequence NA coding protein psRNATarget
EU966347.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||||||||||||||||||
targets:1427   UUAGCCACAAACCAAACAGGCCUU   1450

0.0 Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds NA coding protein psRNATarget
HI403392.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||||||||
targets:107   UUAGCCACGAACCAAACAGGCCUU   130

1.0 Sequence 1517 from Patent EP2074227 NA coding protein psRNATarget
JB163853.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||||||||
targets:107   UUAGCCACGAACCAAACAGGCCUU   130

1.0 Sequence 1517 from Patent EP2559767 NA coding protein psRNATarget
LQ235522.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||||||||
targets:107   UUAGCCACGAACCAAACAGGCCUU   130

1.0 Sequence 1517 from Patent EP2985353 NA coding protein psRNATarget
EU974994.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||||=|||
targets:833   UUAGCCACGAACCAAACAGGUCUU   856

2.5 Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds NA coding protein psRNATarget
NM_001158867.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||||=|||
targets:833   UUAGCCACGAACCAAACAGGUCUU   856

2.5 Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA NA coding protein psRNATarget
BT088093.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||||=|||
targets:814   UUAGCCACGAACCAAACAGGUCUU   837

2.5 Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds NA coding protein psRNATarget
BT065116.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=||||||||||||||*
targets:1068   UUAGCCACGAACCAAACAGGCCUG   1091

2.0 Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds NA coding protein psRNATarget
XM_008676108.2
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||||||||||||||||*|
targets:995   UUAGCCACAAACCAAACAGGCCCU   1018

1.5 PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
XM_008654136.2
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||||||||||||*|||||
targets:1410   UUAGCCACAAACCAAACAUGCCUU   1433

1.5 PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA NA coding protein psRNATarget
NM_001346844.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||||||||||||||||*|
targets:1585   UUAGCCACAAACCAAACAGGCCCU   1608

1.5 Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA NA coding protein psRNATarget
LQ235414.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=||||||||||*||||
targets:104   UUAGCCACGAACCAAACAGACCUU   127

2.5 Sequence 1409 from Patent EP2985353 NA coding protein psRNATarget
JB163745.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=||||||||||*||||
targets:104   UUAGCCACGAACCAAACAGACCUU   127

2.5 Sequence 1409 from Patent EP2559767 NA coding protein psRNATarget
HI403284.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=||||||||||*||||
targets:104   UUAGCCACGAACCAAACAGACCUU   127

2.5 Sequence 1409 from Patent EP2074227 NA coding protein psRNATarget
HI403368.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||*|||||
targets:107   UUAGCCACGAACCAAACAAGCCUU   130

2.5 Sequence 1493 from Patent EP2074227 NA coding protein psRNATarget
JB163829.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||*|||||
targets:107   UUAGCCACGAACCAAACAAGCCUU   130

2.5 Sequence 1493 from Patent EP2559767 NA coding protein psRNATarget
LQ235498.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||*|||||
targets:107   UUAGCCACGAACCAAACAAGCCUU   130

2.5 Sequence 1493 from Patent EP2985353 NA coding protein psRNATarget
EU958119.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||*|||||
targets:1021   UUAGCCACGAACCAAACAAGCCUU   1044

2.5 Zea mays clone 1674247 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149797.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||*|||||
targets:1021   UUAGCCACGAACCAAACAAGCCUU   1044

2.5 Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
XM_008681572.2
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGAA   1
  ||||||||=|||||||||||||*|
targets:2491   UUAGCCACGAACCAAACAGGCCCU   2514

2.5 PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA NA coding protein psRNATarget
NM_001149469.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGG-AA   1
  |||*||||||||||||||||||-||
targets:215   UUAACCACAAACCAAACAGGCCCUU   239

3.0 Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA NA coding protein psRNATarget
EU955574.1
ncRNA:24   AAUCGGUGUUUGGUUUGUCCGG-AA   1
  |||*||||||||||||||||||-||
targets:215   UUAACCACAAACCAAACAGGCCCUU   239

3.0 Zea mays clone 1537438 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ052567.1
ncRNA:24   AAU-CGGUGUUUGGUUUGUCCGGAA   1
  |||-||*=||||||||||||||||*
targets:575   UUAUGCAGCAAACCAAACAGGCCUA   599

3.0 TSA: Zea mays contig53688, mRNA sequence NA coding protein psRNATarget
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