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BaseInfo

ncRNA ID	novel_zma_miR238
Species	Zea mays
Class	miRNA
Genome position	Chr4:69461208-69461360 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089714
Length	24
Mature sequence(if miRNA)	1 - AUCGGACUGUCCGGUGUGCCAUGC - 24
Stem-loop(if miRNA)	--C             U         G          GU        --CACC  -    AUCCA    G  CU    AG    UGGCGCACCGGAC GUCCGGUGU GCACCGGACA  GUCCGGUG      AG GGAG     CUCU AA  GCUC  C    ||||||||||||| ||||||||| ||||||||||  ||||||||      || ||||     |||| ||  ||||    ACCGUGUGGCCUG CAGGCUACG UGUGGCCUGU  CAGGCCAC      UC CCUC     GAGG UU  UGGG  U CGU             U         A          --        UUAAUA  G    --ACC    G  UU    CU
Stem-loop sequence	CUGGCGCACCGGACUGUCCGGUGUGGCACCGGACAGUGUCCGGUGCACCAGGGAGAUCCACUCUGAACUGCUCAGCUUCGGGUUUUUGGGAGCCACUCCGCUAUAAUUCACCGGACUGUCCGGUGUAGCAUCGGACUGUCCGGUGUGCCAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ066204.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   |||||||=||||||||||||||=| targets:89   GCAUGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	2.5	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   |||||||=||||||||||||||=| targets:473   GCAUGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ||-|||||||||||||||||||=| targets:696   GC-UGGCACACCGGACAGUCCGGU   718 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   **=|||||||||||||||||||=| targets:797   CGGUGGCACACCGGACAGUCCGGU   820 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=|||||||||||||||||||=| targets:1379   CCGUGGCACACCGGACAGUCCGGU   1402 Target Full Sequence	1.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:1398   CCGGUGCACACCGGACAGUCCGGU   1421 Target Full Sequence	1.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CGU-ACCGUGUGGCCUGUCAGGCUA   1   *||-|||||||||||||||||||=| targets:9   CCACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	1.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CGU-ACCGUGUGGCCUGUCAGGCUA   1   *||-|||||||||||||||||||=| targets:9   CCACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	1.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CGU-ACCGUGUGGCCUGUCAGGCUA   1   *||-|||||||||||||||||||=| targets:9   CCACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	1.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ||*||||=||||||||||||||=| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   |*=||||=||||||||||||||=| targets:489   GAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ||*||||=||||||||||||||=| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   |*=||||=||||||||||||||=| targets:489   GAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   **=|||||||||||||||||||=| targets:94   CGGUGGCACACCGGACAGUCCGGU   117 Target Full Sequence	1.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ||*||||=||||||||||||||=| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||=||||||||||||||=| targets:599   CGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:694   CGUUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:713   CCGGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUACCGUG-UGGCCUGUCAGGCUA   1   *|=**||||-||||||||||||||| targets:815   CCGGUGCACCACCGGACAGUCCGAU   839 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ||*||||=||||||||||||||=| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||=||||||||||||||=| targets:599   CGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:694   CGUUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:713   CCGGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUACCGUG-UGGCCUGUCAGGCUA   1   *|=**||||-||||||||||||||| targets:815   CCGGUGCACCACCGGACAGUCCGAU   839 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   **|||||=||||||||||||||=| targets:173   UGAUGGCGCACCGGACAGUCCGGU   196 Target Full Sequence	2.5	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   **=||||*||||||||||||||=| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   **=||||*||||||||||||||=| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   **=||||*||||||||||||||=| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGU----ACCGUGUGGCCUGUCAGGCUA   1   |||----||||=||||||||||||||=| targets:575   GCAGAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGUA--CCGUGUGGCCUGUCAGGCUA   1   *|||--|||=||||||||||||||=| targets:481   UCAUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:677   CGUUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:598   CCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:696   CCGGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGU----ACCGUGUGGCCUGUCAGGCUA   1   |||----||||=||||||||||||||=| targets:575   GCAGAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGUA--CCGUGUGGCCUGUCAGGCUA   1   *|||--|||=||||||||||||||=| targets:481   UCAUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:677   CGUUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:598   CCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:696   CCGGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   |=*||||=||||||||||||||=| targets:374   GUCUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:580   CGUUGGCUCACCGGACAGUCCGGU   603 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:599   CCGGUGCACACCGGACAGUCCGGU   622 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***|||||||||||||||||||=| targets:722   CGUUGGCACACCGGACAGUCCGGU   745 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:741   CCGGUGCACACCGGACAGUCCGGU   764 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:705   CGUUGGCUCACCGGACAGUCCGGU   728 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CGUA--CCGUGUGGCCUGUCAGGCUA   1   *|||--|||=||||||||||||||=| targets:4375   UCAUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:4608   CCGGUGCACACCGGACAGUCCGGU   4631 Target Full Sequence	1.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:21   ACCGUGUGGCCUGUCAGGCUA   1   ||||=||||||||||||||=| targets:1   UGGCGCACCGGACAGUCCGGU   21 Target Full Sequence	2.5	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CGUA--CCGUGUGGCCUGUCAGGCUA   1   *|=|--|||=||||||||||||||=| targets:493   UCGUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:716   CGUUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:735   CCGGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:838   CCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CGUA--CCGUGUGGCCUGUCAGGCUA   1   *|=|--|||=||||||||||||||=| targets:493   UCGUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:716   CGUUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:735   CCGGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:838   CCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:541   CGUUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:560   CCGGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:541   CGUUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:560   CCGGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:389   CGUUGGCUCACCGGACAGUCCGGU   412 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:408   CCGGUGCACACCGGACAGUCCGGU   431 Target Full Sequence	1.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   *|=**|||||||||||||||||=| targets:282   CCGGUGCACACCGGACAGUCCGGU   305 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   |**||||=||||||||||||||=| targets:2538   GACUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:2749   CGUUGGCUCACCGGACAGUCCGGU   2772 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:687   UGUUGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CGUACCGUGUGGCCUGUCAGGCUA   1   ***||||*||||||||||||||=| targets:687   UGUUGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget