Search result

BaseInfo

ncRNA ID novel_zma_miR236
Species Zea mays
Class miRNA
Genome position Chr4:77039692-77039902 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089713;SRR2089703;SRR2089706
Length 24
Mature sequence(if miRNA) 188 - ACUUGUAUUGAGGUGGAUUGGGGU - 211
Stem-loop(if miRNA) --  U   A                     U   AAC   U        C            C   U                          C     A AG  
  AC UGU UUGAGGUGGAUUGGGGUGUAA UUA   UAA UUACACCC AAUCCACCUCAA ACA GUGGAUUGAGGUCAAUACUAGAGUAC CAAAC A  CCU
  || ||| ||||||||||||||||||||| |||   ||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||| ||||| |  ||U
  UG ACA AACUCCACCUAACCCCACAUU AAU   AUU AAUGUGGG UUAGGUGGAGUU UGU CACCUAACUCUAGUUAUGAUCUCAUG GUUUG U  GGA
GG  U   C                     U   CAA   C        A            A   U                          A     A CU  
Stem-loop sequence ACUUGUAUUGAGGUGGAUUGGGGUGUAAUUUAAACUAAUUUACACCCCAAUCCACCUCAACACAUGUGGAUUGAGGUCAAUACUAGAGUACCCAAACAAAGCCUUAGGUCUAGUUUGAGUACUCUAGUAUUGAUCUCAAUCCACUUGUAUUGAGGUGGAUUAGGGUGUAACUUAAACUAAUUUACACCCCAAUCCACCUCAACACAUGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235449.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||||||=|||||||||||||||
targets:64   ACCCCAAUUCACCUCAAUACAAGU   87

1.0 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
JB163780.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||||||=|||||||||||||||
targets:64   ACCCCAAUUCACCUCAAUACAAGU   87

1.0 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
HI403319.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||||||=|||||||||||||||
targets:64   ACCCCAAUUCACCUCAAUACAAGU   87

1.0 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
LQ239362.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||==|||||||||||||||||||
targets:25   ACCUUAAUCCACCUCAAUACAAGU   48

0.0 Sequence 5357 from Patent EP2985353 NA coding protein psRNATarget
JB167693.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||==|||||||||||||||||||
targets:25   ACCUUAAUCCACCUCAAUACAAGU   48

0.0 Sequence 5357 from Patent EP2559767 NA coding protein psRNATarget
HI407232.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||==|||||||||||||||||||
targets:25   ACCUUAAUCCACCUCAAUACAAGU   48

0.0 Sequence 5357 from Patent EP2074227 NA coding protein psRNATarget
EU963469.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||==|||||||||||||||||||
targets:975   ACCUUAAUCCACCUCAAUACAAGU   998

0.0 Zea mays clone 263014 mRNA sequence NA coding protein psRNATarget
JB163527.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||||||||||||||||||||*||
targets:63   ACCCCAAUCCACCUCAAUACAUGU   86

1.5 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||||||||||||||||||||*||
targets:63   ACCCCAAUCCACCUCAAUACAUGU   86

1.5 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
HI403066.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||||||||||||||||||||*||
targets:63   ACCCCAAUCCACCUCAAUACAUGU   86

1.5 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
HI402950.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||||||||||||||*||
targets:62   ACCCUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||||||||||||||*||
targets:62   ACCCUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
JB163411.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||||||||||||||*||
targets:62   ACCCUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
JB167199.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |=|||||||||||||||||||*||
targets:66   AUCCCAAUCCACCUCAAUACAUGU   89

1.5 Sequence 4863 from Patent EP2559767 NA coding protein psRNATarget
LQ238868.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |=|||||||||||||||||||*||
targets:66   AUCCCAAUCCACCUCAAUACAUGU   89

1.5 Sequence 4863 from Patent EP2985353 NA coding protein psRNATarget
HI406738.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |=|||||||||||||||||||*||
targets:66   AUCCCAAUCCACCUCAAUACAUGU   89

1.5 Sequence 4863 from Patent EP2074227 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||||||||=||||||||||*||
targets:63   ACCCCAAUCCGCCUCAAUACAUGU   86

2.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
HI403017.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||||||||=||||||||||*||
targets:63   ACCCCAAUCCGCCUCAAUACAUGU   86

2.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
JB163478.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||||||||=||||||||||*||
targets:63   ACCCCAAUCCGCCUCAAUACAUGU   86

2.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
EZ069719.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||||||||||||||*||
targets:55   ACCCUAAUCCACCUCAAUACAUGU   78

1.5 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
EU941642.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||=|||||||||||||||||*||
targets:12   ACCUCAAUCCACCUCAAUACAUGU   35

1.5 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
NM_001156128.2
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||=|||||||||||||||||*||
targets:885   ACCUCAAUCCACCUCAAUACAUGU   908

1.5 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
BT085755.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||=|||||||||||||||||*||
targets:885   ACCUCAAUCCACCUCAAUACAUGU   908

1.5 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
EU963895.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |=|||||||||||||||||||*||
targets:982   AUCCCAAUCCACCUCAAUACAUGU   1005

1.5 Zea mays clone 273839 protein SFT2 mRNA, complete cds NA coding protein psRNATarget
JB163953.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=||||||||||||||||*||
targets:78   ACUCUAAUCCACCUCAAUACAUGU   101

1.5 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
HI403492.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=||||||||||||||||*||
targets:78   ACUCUAAUCCACCUCAAUACAUGU   101

1.5 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
LQ235622.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=||||||||||||||||*||
targets:78   ACUCUAAUCCACCUCAAUACAUGU   101

1.5 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
EZ108049.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||=|||||||||||*||
targets:265   ACCCUAAUCUACCUCAAUACAUGU   288

2.5 TSA: Zea mays contig43707, mRNA sequence NA coding protein psRNATarget
BT066687.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||=|||||||||||*||
targets:872   ACCCUAAUCUACCUCAAUACAUGU   895

2.5 Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds NA coding protein psRNATarget
NM_001175915.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||=|||||||||||*||
targets:872   ACCCUAAUCUACCUCAAUACAUGU   895

2.5 Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA NA coding protein psRNATarget
EU962825.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||=|||||||||||*||
targets:956   ACCCUAAUCUACCUCAAUACAUGU   979

2.5 Zea mays clone 245793 mRNA sequence NA coding protein psRNATarget
AY103846.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||||=||||=|||||||||||*||
targets:976   ACCCUAAUCUACCUCAAUACAUGU   999

2.5 Zea mays PCO130752 mRNA sequence NA coding protein psRNATarget
BT085111.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |==||||||||||||||||||*||
targets:1193   AUUCCAAUCCACCUCAAUACAUGU   1216

1.5 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
LQ235139.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=|||=||||||||||||*||
targets:90   ACUCUAAUUCACCUCAAUACAUGU   113

2.5 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
HI403009.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=|||=||||||||||||*||
targets:90   ACUCUAAUUCACCUCAAUACAUGU   113

2.5 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
JB163470.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=|||=||||||||||||*||
targets:90   ACUCUAAUUCACCUCAAUACAUGU   113

2.5 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
JB163427.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||*=||||||||||||||||*||
targets:62   ACCAUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||*=||||||||||||||||*||
targets:62   ACCAUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
HI402966.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  |||*=||||||||||||||||*||
targets:62   ACCAUAAUCCACCUCAAUACAUGU   85

1.5 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
XM_020550625.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=||||*|||||||||||||*||
targets:2944   ACUCCAAACCACCUCAAUACACGU   2967

2.5 PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA NA coding protein psRNATarget
XM_008677341.2
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=||||*|||||||||||||*||
targets:2960   ACUCCAAACCACCUCAAUACACGU   2983

2.5 PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA NA coding protein psRNATarget
LQ235268.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=||||*|||||||||||*||
targets:63   ACUCUAAUCGACCUCAAUACAUGU   86

2.5 Sequence 1263 from Patent EP2985353 NA coding protein psRNATarget
HI403138.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=||||*|||||||||||*||
targets:63   ACUCUAAUCGACCUCAAUACAUGU   86

2.5 Sequence 1263 from Patent EP2074227 NA coding protein psRNATarget
JB163599.1
ncRNA:24   UGGGGUUAGGUGGAGUUAUGUUCA   1
  ||=|=||||*|||||||||||*||
targets:63   ACUCUAAUCGACCUCAAUACAUGU   86

2.5 Sequence 1263 from Patent EP2559767 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.