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BaseInfo

ncRNA ID	novel_zma_miR235
Species	Zea mays
Class	miRNA
Genome position	Chr10:118622419-118622509 [+]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2647389
Length	24
Mature sequence(if miRNA)	1 - AUUCUACUUUAGUCACUAAAUUGU - 24
Stem-loop(if miRNA)	--              AC        C              A      AUUCUACUUUAGUC  UAAAUUGU AAAUAUGGAAACUA AAUA   ||||||||||||||  |||||||| |||||||||||||| |||G   UAAGGUGAAAUUAG  AUUUAACG UUUAUACCUUUGAU UUGA AA              AU        U              A
Stem-loop sequence	AUUCUACUUUAGUCACUAAAUUGUCAAAUAUGGAAACUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGAUUAAAGUGGAAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647122.2	ncRNA:24   UGUUAAAUCACUGAUUUCAUCUUA   1   |||||||||||||||||||=|||| targets:3068   ACAAUUUAGUGACUAAAGUGGAAU   3091 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UGUUAAAUCACUGAUUUCAUCUUA   1   |||||||||||||||||||=|||| targets:2679   ACAAUUUAGUGACUAAAGUGGAAU   2702 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   UGUUAAAUCACUGAUUUCAUCUUA   1   ==|||||||*|||||||*|||||| targets:108   GUAAUUUAGGGACUAAAAUAGAAU   131 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   UGUUAAAUCACUGAUUUCAUCUUA   1   ==|||||||*|||||||*|||||| targets:108   GUAAUUUAGGGACUAAAAUAGAAU   131 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   UGUUAAAUCACUGAUUUCAUCUUA   1   ==|||||||*|||||||*|||||| targets:108   GUAAUUUAGGGACUAAAAUAGAAU   131 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget