ncRNA ID | osa-miR171i-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:21191603-21191722 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 8 - AGGUAUUGGCGUGCCUCAAUC - 28 |
Stem-loop(if miRNA) |
----UAAAA               C          -           AUUACAG  AC  C  C          AGAGGUAUUGGCGUG CUCAAUCCGA AGGCAUGGCUG       GC  CU GA C          ||||||||||||||| |||||||||| |||||||||||       ||  || ||          UCUCUAUAACUGCGC GAGUUAGGUU UUUGUACCGAC       CG  GA CU G CUUCGUUCC               C          C           ----GUA  -C  U  A |
Stem-loop sequence | UAAAAAGAGGUAUUGGCGUGCCUCAAUCCGAAGGCAUGGCUGAUUACAGGCACCUCGACCGAUCUAGCGCAUGCAGCCAUGUUUCUUGGAUUGAGCCGCGUCAAUAUCUCUCCUUGCUUC |
1 | PMID:15685364
"Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"; Li Y, Li W, Jin YX; Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005). |
2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |