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BaseInfo

ncRNA ID osa-miR171i-5p
Species Oryza sativa
Class miRNA
Genome position Chr3:21191603-21191722 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 8 - AGGUAUUGGCGUGCCUCAAUC - 28
Stem-loop(if miRNA) ----UAAAA               C          -           AUUACAG  AC  C  C
         AGAGGUAUUGGCGUG CUCAAUCCGA AGGCAUGGCUG       GC  CU GA C
         ||||||||||||||| |||||||||| |||||||||||       ||  || ||
         UCUCUAUAACUGCGC GAGUUAGGUU UUUGUACCGAC       CG  GA CU G
CUUCGUUCC               C          C           ----GUA  -C  U  A
Stem-loop sequence UAAAAAGAGGUAUUGGCGUGCCUCAAUCCGAAGGCAUGGCUGAUUACAGGCACCUCGACCGAUCUAGCGCAUGCAGCCAUGUUUCUUGGAUUGAGCCGCGUCAAUAUCUCUCCUUGCUUC

Reference

1 PMID:15685364
"Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa";
Li Y, Li W, Jin YX;
Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).