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BaseInfo

ncRNA ID	novel_zma_miR225
Species	Zea mays
Class	miRNA
Genome position	Chr10:45626918-45626980 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089713
Length	24
Mature sequence(if miRNA)	1 - GCACCGGACUGUCUGGUGGGGCAC - 24
Stem-loop(if miRNA)	--G    --     -       GGG             CACC  GGACU GUCUGGU   GCACUGGAUA    ||||  ||||| |||||||   |||||||||G    GUGG  CCUGA CAGACCG   CGUGGCCUGU CAA    AA     G       ---
Stem-loop sequence	GCACCGGACUGUCUGGUGGGGCACUGGAUAGUGUCCGGUGCGCCAGACGAGUCCAAGGUGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061123.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||||=||||=||||||||||||| targets:355   GUGCCUCACCGGACAGUCCGGUGC   378 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||||=||||=||||||||||||| targets:1471   GUGCCUCACCGGACAGUCCGGUGC   1494 Target Full Sequence	2.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||| targets:1400   GGUGCACACCGGACAGUCCGGUGC   1423 Target Full Sequence	2.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*||||||=||||||||||||| targets:31   GUGGCCCACCGGACAGUCCGGUGC   54 Target Full Sequence	1.0	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*||||||=||||||||||||| targets:31   GUGGCCCACCGGACAGUCCGGUGC   54 Target Full Sequence	1.0	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*||||||=||||||||||||| targets:31   GUGGCCCACCGGACAGUCCGGUGC   54 Target Full Sequence	1.0	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
JB169901.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGUGC   55 Target Full Sequence	1.0	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
HI409440.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGUGC   55 Target Full Sequence	1.0	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:32   GUGCACCACCGGACAGUCCGGUGC   55 Target Full Sequence	1.0	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||=||||||=||||||||||||| targets:815   UUGUCCCACCGGACAGUCCGGUGC   838 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||| targets:743   GGUGCACACCGGACAGUCCGGUGC   766 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:726   GUGCACCACCGGACAGUCCGGUGC   749 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:582   UUGGCUCACCGGACAGUCCGGUGC   605 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||| targets:376   CUGGCGCACCGGACAGUCCGGUGC   399 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:601   GGUGCACACCGGACAGUCCGGUGA   624 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:802   GUGCACCACCGGACAGUCCGGUGC   825 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:679   UUGGCUCACCGGACAGUCCGGUGC   702 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:698   GGUGCACACCGGACAGUCCGGUGA   721 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:802   GUGCACCACCGGACAGUCCGGUGC   825 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:679   UUGGCUCACCGGACAGUCCGGUGC   702 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:698   GGUGCACACCGGACAGUCCGGUGA   721 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:665   GUGCACCACCGGACAGUCCGGUGC   688 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:543   UUGGCUCACCGGACAGUCCGGUGC   566 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   **|*|*||||=||||||||||||| targets:332   CGGGCGCACCGGACAGUCCGGUGC   355 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:562   GGUGCACACCGGACAGUCCGGUGA   585 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:665   GUGCACCACCGGACAGUCCGGUGC   688 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:543   UUGGCUCACCGGACAGUCCGGUGC   566 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   **|*|*||||=||||||||||||| targets:332   CGGGCGCACCGGACAGUCCGGUGC   355 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:562   GGUGCACACCGGACAGUCCGGUGA   585 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001349964.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:2994   GUGCGCCACCGGACAGUCCGGUGC   3017 Target Full Sequence	1.0	Zea mays uncharacterized LOC100278112 (IDP592), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||| targets:4713   GUGCACCACCGGACAGUCCGGUGC   4736 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||=|=||||=||||||||||||| targets:4591   UUGUCUCACCGGACAGUCCGGUGC   4614 Target Full Sequence	2.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
HI409909.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:34   GUGCACCACCGGACAGUCCGGUGU   57 Target Full Sequence	2.0	Sequence 8034 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242039.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:34   GUGCACCACCGGACAGUCCGGUGU   57 Target Full Sequence	2.0	Sequence 8034 from Patent EP2985353	NA	coding protein	psRNATarget
JB170370.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:34   GUGCACCACCGGACAGUCCGGUGU   57 Target Full Sequence	2.0	Sequence 8034 from Patent EP2559767	NA	coding protein	psRNATarget
JB169399.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
HI408938.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
JB170644.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
HI410183.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
HI409038.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
JB169499.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:32   GUGCACCACCGGACAGUCCGGUGU   55 Target Full Sequence	2.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||==||||=||||||||||||* targets:682   GUGCUUCACCGGACAGUCCGGUGA   705 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*||||||||||||||||||* targets:727   GUGCACCACCAGACAGUCCGGUGA   750 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:852   GUGCACCACCGGACAGUCCGGUGU   875 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*|||||||||||||||||| targets:485   GUGGCGCACCAGACAGUCCGGUGC   508 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
EZ101438.1	ncRNA:24   CACGGG-GUGGUCUGUCAGGCCACG   1   ||||*|-|||||||||||||||||| targets:37   GUGCACGCACCAGACAGUCCGGUGC   61 Target Full Sequence	2.0	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=||||||||||||= targets:535   GUGCACCACCGGACAGUCCGGUGU   558 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:391   UUGGCUCACCGGACAGUCCGGUGC   414 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||***||||=||||||||||||| targets:180   GUGGAGCACCGGACAGUCCGGUGC   203 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:410   GGUGCACACCGGACAGUCCGGUGA   433 Target Full Sequence	3.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
JB170466.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*|||||||||||||||||| targets:5   GUGGCGCACCAGACAGUCCGGUGC   28 Target Full Sequence	1.0	Sequence 8130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242135.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*|||||||||||||||||| targets:5   GUGGCGCACCAGACAGUCCGGUGC   28 Target Full Sequence	1.0	Sequence 8130 from Patent EP2985353	NA	coding protein	psRNATarget
HI410005.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*|||||||||||||||||| targets:5   GUGGCGCACCAGACAGUCCGGUGC   28 Target Full Sequence	1.0	Sequence 8130 from Patent EP2074227	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *|||*|||||=||||||||||||| targets:1029   AUGCGCCACCGGACAGUCCGGUGC   1052 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *|||*|||||=||||||||||||| targets:1400   AUGCGCCACCGGACAGUCCGGUGC   1423 Target Full Sequence	1.0	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|=||||=||||||||||||* targets:26   GUGACUCACCGGACAGUCCGGUGA   49 Target Full Sequence	3.0	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*||||=||||||||||||| targets:96   GUGGCACACCGGACAGUCCGGUGC   119 Target Full Sequence	2.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:718   UUGGCUCACCGGACAGUCCGGUGC   741 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CA--CGGGGUGGUCUGUCAGGCCACG   1   ||--|*|*||||=||||||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGUGC   520 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:737   GGUGCACACCGGACAGUCCGGUGA   760 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:718   UUGGCUCACCGGACAGUCCGGUGC   741 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CA--CGGGGUGGUCUGUCAGGCCACG   1   ||--|*|*||||=||||||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGUGC   520 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:737   GGUGCACACCGGACAGUCCGGUGA   760 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:689   UUGGCUCACCGGACAGUCCGGUGC   712 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:689   UUGGCUCACCGGACAGUCCGGUGC   712 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:696   UUGGCUCACCGGACAGUCCGGUGC   719 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=|||||||||*||| targets:818   GUGCACCACCGGACAGUCCGAUGC   841 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||| targets:601   UUGGCGCACCGGACAGUCCGGUGC   624 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:715   GGUGCACACCGGACAGUCCGGUGA   738 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:696   UUGGCUCACCGGACAGUCCGGUGC   719 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=|||||||||*||| targets:818   GUGCACCACCGGACAGUCCGAUGC   841 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||| targets:601   UUGGCGCACCGGACAGUCCGGUGC   624 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |***|*||||=||||||||||||* targets:715   GGUGCACACCGGACAGUCCGGUGA   738 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|=||||=||||||||||||| targets:2751   UUGGCUCACCGGACAGUCCGGUGC   2774 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||| targets:2540   CUGGCGCACCGGACAGUCCGGUGC   2563 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
BT016820.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   ||||*|||||=|||*||||||||| targets:185   GUGCACCACCGGACUGUCCGGUGC   208 Target Full Sequence	2.5	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*||||=||||||||||||| targets:799   GUGGCACACCGGACAGUCCGGUGC   822 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||| targets:475   AUGGCGCACCGGACAGUCCGGUGC   498 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*||||=||||||||||||| targets:491   GUGGCGCACCGGACAGUCCGGUGC   514 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||= targets:780   CUGGCGCACCGGACAGUCCGGUGU   803 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*||||=||||||||||||| targets:491   GUGGCGCACCGGACAGUCCGGUGC   514 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||= targets:780   CUGGCGCACCGGACAGUCCGGUGU   803 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||* targets:12   CUGGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	3.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||* targets:12   CUGGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	3.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||* targets:12   CUGGCACACCGGACAGUCCGGUGA   35 Target Full Sequence	3.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*=*||||=||||||||||||| targets:149   GUGGUGCACCGGACAGUCCGGUGC   172 Target Full Sequence	2.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*=*||||=||||||||||||| targets:149   GUGGUGCACCGGACAGUCCGGUGC   172 Target Full Sequence	2.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*=*||||=||||||||||||| targets:149   GUGGUGCACCGGACAGUCCGGUGC   172 Target Full Sequence	2.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI409089.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*|||==||||||||||||| targets:67   GUGGCGCACUGGACAGUCCGGUGC   90 Target Full Sequence	3.0	Sequence 7214 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241219.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*|||==||||||||||||| targets:67   GUGGCGCACUGGACAGUCCGGUGC   90 Target Full Sequence	3.0	Sequence 7214 from Patent EP2985353	NA	coding protein	psRNATarget
JB169550.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||*|*|||==||||||||||||| targets:67   GUGGCGCACUGGACAGUCCGGUGC   90 Target Full Sequence	3.0	Sequence 7214 from Patent EP2559767	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   *||*|*||||=||||||||||||| targets:175   AUGGCGCACCGGACAGUCCGGUGC   198 Target Full Sequence	2.0	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||**|||||=||||||||||||* targets:649   GUGAACCACCGGACAGUCCGGUGA   672 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650945.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||=**||||||||*||||||||| targets:973   GUGUGGCACCAGACUGUCCGGUGC   996 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA	NA	coding protein	psRNATarget
EU952069.1	ncRNA:24   CACGGGGUGGUCUGUCAGGCCACG   1   |||=**||||||||*||||||||| targets:981   GUGUGGCACCAGACUGUCCGGUGC   1004 Target Full Sequence	2.5	Zea mays clone 1155789 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget