Search result

BaseInfo

ncRNA ID	novel_zma_miR213
Species	Zea mays
Class	miRNA
Genome position	Chr4:189383498-189383622 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2287159;SRR2287160;SRR2287163;SRR2287165;SRR1997865;SRR5451004;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089704;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AAAUACGAUUUCUAGUGACGGUUU - 24
Stem-loop(if miRNA)	--    C                    C                         C  C        ACCG CACUAGAAAUCGUAUUUCUA UGGCGGUUCCUUAAGAAAACCGCCA UA AAAUCA   |||| |||||||||||||||||||| ||||||||||||||||||||||||| || |||||U   UGGC GUGAUCUUUAGCAUAAAGAU ACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGG UU    A                    C                         C  C
Stem-loop sequence	ACCGCCACUAGAAAUCGUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCACUACAAAUCAUGGAUUUCUACUGGCGGUUUUCUUAAGGAACCGCCACUAGAAAUACGAUUUCUAGUGACGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166343.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.0	Sequence 4007 from Patent EP2559767	NA	coding protein	psRNATarget
HI405882.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.0	Sequence 4007 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238012.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.0	Sequence 4007 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||||||||||||||*||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.0	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||||||||||||||*||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.0	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.0	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||||||||||||||*||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget