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BaseInfo

ncRNA ID	novel_zma_miR202
Species	Zea mays
Class	miRNA
Genome position	Chr4:231267416-231267512 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2287031;SRR1997865
Length	24
Mature sequence(if miRNA)	74 - GCGGACCGUUCGGCCCACAGGCGC - 97
Stem-loop(if miRNA)	---G     C         AC    G     C      CCCA      C     CGGAC GUUCGGCCC  AGGC CGGAC GUUCGU    CAGGCG G     ||||| |||||||||  |||| ||||| ||||||    |||||| G     GCCUG CAGGCCGGG  UCCG GCCUG CAGGCA    GUCUGC A UGCA     C         AC    -     C      CCAG      C
Stem-loop sequence	GCGGACCGUUCGGCCCACAGGCGCGGACCGUUCGUCCCACAGGCGCGGACCGUCUGGACCACGGACCGUCCGGCCUCAGGGCCGGACCGUCCGACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943239.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:334   GCGCCUGUGGGCCGGACGGUCCGC   357 Target Full Sequence	1.5	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:856   GCGCCUGUGGGCCGGACGGUCCGC   879 Target Full Sequence	1.5	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:1447   GCGCCUGUGGGCCGGACGGUCCGC   1470 Target Full Sequence	1.5	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:1447   GCGCCUGUGGGCCGGACGGUCCGC   1470 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679932.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:1839   GCGCCUGUGGGCCGGACGGUCCGC   1862 Target Full Sequence	1.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552482.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:1875   GCGCCUGUGGGCCGGACGGUCCGC   1898 Target Full Sequence	1.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:1931   GCGCCUGUGGGCCGGACGGUCCGC   1954 Target Full Sequence	1.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:1931   GCGCCUGUGGGCCGGACGGUCCGC   1954 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||| targets:3669   GCGCCUGUGGGCCGGACGGUCCGC   3692 Target Full Sequence	1.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU949855.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   ||||||||||||||=||||||||= targets:422   GCGCCUGUGGGCCGGACGGUCCGU   445 Target Full Sequence	2.5	Zea mays clone 449025 mRNA sequence	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   |||||||*||||||=||||||||| targets:2217   GCGCCUGGGGGCCGGACGGUCCGC   2240 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
HI405866.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   |=|*|*|*|||||||||||||||| targets:32   GUGGCCGAGGGCCGAACGGUCCGC   55 Target Full Sequence	2.0	Sequence 3991 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237996.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   |=|*|*|*|||||||||||||||| targets:32   GUGGCCGAGGGCCGAACGGUCCGC   55 Target Full Sequence	2.0	Sequence 3991 from Patent EP2985353	NA	coding protein	psRNATarget
JB166327.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   |=|*|*|*|||||||||||||||| targets:32   GUGGCCGAGGGCCGAACGGUCCGC   55 Target Full Sequence	2.0	Sequence 3991 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008650408.2	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   *||=*|||||||||=||||||||= targets:1847   ACGUGUGUGGGCCGGACGGUCCGU   1870 Target Full Sequence	2.5	PREDICTED: Zea mays type I inositol polyphosphate 5-phosphatase 8 (LOC103629231), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540194.1	ncRNA:24   CGCGGACACCCGGCUUGCCAGGCG   1   *||=*|||||||||=||||||||= targets:1872   ACGUGUGUGGGCCGGACGGUCCGU   1895 Target Full Sequence	2.5	PREDICTED: Zea mays type I inositol polyphosphate 5-phosphatase 8 (LOC103629231), transcript variant X1, mRNA	NA	coding protein	psRNATarget