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BaseInfo

ncRNA ID	novel_zma_miR201
Species	Zea mays
Class	miRNA
Genome position	Chr4:234353264-234353359 [+]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	73 - AUCUCCCUCAAUCCAUAUGGAUUG - 96
Stem-loop(if miRNA)	--              GA         UACGGAUU  A  AAA   UG -   A   AUCCAUAUGGAUUG  GGGGAUUGA        GG GG   UUU  A CUU C   ||||||||||||||  |||||||||        || ||   |||  | |||   UAGGUAUACCUAAC  CCUCUAACU        CC CC   AAA  U GAG U GU              UC         --------  -  --C   GU A   A
Stem-loop sequence	AUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGAAAUUUUGACUUACUAGAGAUUGAAACCCCCUCAAUCUCCCUCAAUCCAUAUGGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406643.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   |||||||||||||||||||||||| targets:27   CAAUCCAUAUGGAUUGAGGGAGAU   50 Target Full Sequence	0.0	Sequence 4768 from Patent EP2074227	NA	coding protein	psRNATarget
JB167104.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   |||||||||||||||||||||||| targets:27   CAAUCCAUAUGGAUUGAGGGAGAU   50 Target Full Sequence	0.0	Sequence 4768 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238773.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   |||||||||||||||||||||||| targets:27   CAAUCCAUAUGGAUUGAGGGAGAU   50 Target Full Sequence	0.0	Sequence 4768 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||||=||| targets:374   CAAUCCAUAUGGAUUGAGGGGGAU   397 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||||=||| targets:713   CAAUCCAUAUGGAUUGAGGGGGAU   736 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||||=||| targets:976   CAAUCCAUAUGGAUUGAGGGGGAU   999 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||||=||| targets:1014   CAAUCCAUAUGGAUUGAGGGGGAU   1037 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||||=||| targets:1559   CAAUCCAUAUGGAUUGAGGGGGAU   1582 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
HI405896.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||*||||| targets:11   CAAUCCAUAUGGAUUGAGUGAGAU   34 Target Full Sequence	1.5	Sequence 4021 from Patent EP2074227	NA	coding protein	psRNATarget
JB166357.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||*||||| targets:11   CAAUCCAUAUGGAUUGAGUGAGAU   34 Target Full Sequence	1.5	Sequence 4021 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238026.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||*||||| targets:11   CAAUCCAUAUGGAUUGAGUGAGAU   34 Target Full Sequence	1.5	Sequence 4021 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020550074.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||*||||| targets:724   CAAUCCAUAUGGAUUGAGUGAGAU   747 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550075.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||*||||| targets:732   CAAUCCAUAUGGAUUGAGUGAGAU   755 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU961636.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||||||*| targets:1058   CAAUCCAUAUGGAUUGAGGGAGUU   1081 Target Full Sequence	1.5	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
BT040208.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||||||||||*||||| targets:1297   CAAUCCAUAUGGAUUGAGUGAGAU   1320 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds	NA	coding protein	psRNATarget
LQ242290.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:6   CAAUUCAUAUGGAUUGAGUGAGAU   29 Target Full Sequence	1.5	Sequence 8285 from Patent EP2985353	NA	coding protein	psRNATarget
HI410160.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:6   CAAUUCAUAUGGAUUGAGUGAGAU   29 Target Full Sequence	1.5	Sequence 8285 from Patent EP2074227	NA	coding protein	psRNATarget
JB170621.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:6   CAAUUCAUAUGGAUUGAGUGAGAU   29 Target Full Sequence	1.5	Sequence 8285 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242020.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:3   CAAUCCAUGUGGAUUGAGUGAGAU   26 Target Full Sequence	2.5	Sequence 8015 from Patent EP2985353	NA	coding protein	psRNATarget
HI409890.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:3   CAAUCCAUGUGGAUUGAGUGAGAU   26 Target Full Sequence	2.5	Sequence 8015 from Patent EP2074227	NA	coding protein	psRNATarget
JB170351.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:3   CAAUCCAUGUGGAUUGAGUGAGAU   26 Target Full Sequence	2.5	Sequence 8015 from Patent EP2559767	NA	coding protein	psRNATarget
JB166297.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 3961 from Patent EP2559767	NA	coding protein	psRNATarget
HI405836.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 3961 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237966.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 3961 from Patent EP2985353	NA	coding protein	psRNATarget
HI405887.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:24   CAAUCCAUGUGGAUUGAGUGAGAU   47 Target Full Sequence	2.5	Sequence 4012 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238017.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:24   CAAUCCAUGUGGAUUGAGUGAGAU   47 Target Full Sequence	2.5	Sequence 4012 from Patent EP2985353	NA	coding protein	psRNATarget
JB166348.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:24   CAAUCCAUGUGGAUUGAGUGAGAU   47 Target Full Sequence	2.5	Sequence 4012 from Patent EP2559767	NA	coding protein	psRNATarget
HI405840.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 3965 from Patent EP2074227	NA	coding protein	psRNATarget
JB166341.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 4005 from Patent EP2559767	NA	coding protein	psRNATarget
JB166301.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 3965 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238010.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 4005 from Patent EP2985353	NA	coding protein	psRNATarget
HI405880.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 4005 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237970.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGAGAU   45 Target Full Sequence	2.5	Sequence 3965 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238016.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:25   CAAUCCAUGUGGAUUGAGUGAGAU   48 Target Full Sequence	2.5	Sequence 4011 from Patent EP2985353	NA	coding protein	psRNATarget
JB166347.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:25   CAAUCCAUGUGGAUUGAGUGAGAU   48 Target Full Sequence	2.5	Sequence 4011 from Patent EP2559767	NA	coding protein	psRNATarget
HI405886.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:25   CAAUCCAUGUGGAUUGAGUGAGAU   48 Target Full Sequence	2.5	Sequence 4011 from Patent EP2074227	NA	coding protein	psRNATarget
EU942632.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:188   CAAUCCAUGUGGAUUGAGUGAGAU   211 Target Full Sequence	2.5	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
NM_001149687.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:666   CAAUCCAUGUGGAUUGAGUGAGAU   689 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA	NA	coding protein	psRNATarget
EU957313.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:666   CAAUCCAUGUGGAUUGAGUGAGAU   689 Target Full Sequence	2.5	Zea mays clone 1588341 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657651.2	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:959   CAAUUCAUAUGGAUUGAGUGAGAU   982 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657650.2	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:1038   CAAUUCAUAUGGAUUGAGUGAGAU   1061 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657652.2	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:1080   CAAUUCAUAUGGAUUGAGUGAGAU   1103 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020542405.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:1148   CAAUUCAUAUGGAUUGAGUGAGAU   1171 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542404.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:1158   CAAUUCAUAUGGAUUGAGUGAGAU   1181 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008666573.2	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:1309   CAAUCCAUGUGGAUUGAGCGAGAU   1332 Target Full Sequence	2.5	PREDICTED: Zea mays putative acyl-CoA N-acyltransferases (NAT) family protein (LOC103643400), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088422.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:296   CAAUUCAUAUGGAUUGAGUGAGAU   319 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0189N22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196996.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||=|||||||||||||*||||| targets:296   CAAUUCAUAUGGAUUGAGUGAGAU   319 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502518 (LOC100502518), mRNA	NA	coding protein	psRNATarget
BT039499.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:1472   CAAUCCAUGUGGAUUGAGUGAGAU   1495 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147267.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:1472   CAAUCCAUGUGGAUUGAGUGAGAU   1495 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA	NA	coding protein	psRNATarget
AY109413.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:1578   CAAUCCAUGUGGAUUGAGUGAGAU   1601 Target Full Sequence	2.5	Zea mays CL2362_1 mRNA sequence	NA	coding protein	psRNATarget
EU962683.1	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||=|||||||||*||||| targets:1543   CAAUCCAUGUGGAUUGAGUGAGAU   1566 Target Full Sequence	2.5	Zea mays clone 244714 mRNA sequence	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   ||||||||||*|||||||||=||| targets:230   CAAUCCAUAUAGAUUGAGGGGGAU   253 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   GUUAGGUAUACCUAACUCCCUCUA   1   *=||=*||||||||||||*||||| targets:798   GGAUUGAUAUGGAUUGAGAGAGAU   821 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget