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BaseInfo

ncRNA ID novel_zma_miR200
Species Zea mays
Class miRNA
Genome position Chr4:25232561-25232664 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089706;SRR2089707;SRR2089708
Length 25
Mature sequence(if miRNA) 1 - AAUAGGAUGUUUCCACUGGCGGUUU - 25
Stem-loop(if miRNA) --                        U   AACACA           A   U
  AAUAGGAUGUUUCCACUGGCGGUU GGU      AACCGCCAGUG AAA U
  |||||||||||||||||||||||| |||      ||||||||||| |||
  UUAUCCUACAAAGGUGACCGCCAA UCA      UUGGCGGUCAC UUU G
CU                        U   AUUCUA           C   A
Stem-loop sequence AAUAGGAUGUUUCCACUGGCGGUUUGGUAACACAAACCGCCAGUGAAAAUUGAUUUCCACUGGCGGUUAUCUUAACUUAACCGCCAGUGGAAACAUCCUAUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ101180.1
ncRNA:25   UUUGGCGGUCACCUUUGUAGGAUAA   1
  *|||||||||||||||=||||||||
targets:80   CAACCGCCAGUGGAAAUAUCCUAUU   104

1.5 TSA: Zea mays contig36836, mRNA sequence NA coding protein psRNATarget