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BaseInfo

ncRNA ID	novel_zma_miR199
Species	Zea mays
Class	miRNA
Genome position	Chr4:233132206-233132363 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089714;SRR2089715;SRR2287164;SRR2287165;SRR5451005;SRR2089705;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AACAUUCGAUGUGAUAGGGACUAA - 24
Stem-loop(if miRNA)	--     G         A    CUC  AUAUCC      AG   U        G        GGUCGU  -U   -  CUU   AGUUC UGUCACAUC AAUG   GA      AUUAUG  UAU AAAUAUAG UUUAAUUA      CU  UUA GU   U   ||||| ||||||||| ||||   ||      ||||||  ||| |||||||| ||||||||      ||  ||| ||   UCAGG AUAGUGUAG UUAC   CU      UAAUAC  AUA UUUAUAUU AGAUUAAU      GA  AAU CA   A AA     G         C    AAA  GGCUAU      CU   U        -        -AUAUU  UU   G  UCU
Stem-loop sequence	AGUUCGUGUCACAUCAAAUGCUCGAAUAUCCAUUAUGAGUAUUAAAUAUAGGUUUAAUUAGGUCGUCUUUUAGUCUUUAUCUACGUAAUUAGUUAUAUAAUUAGAUUAUAUUUUAUAUCCAUAAUUAUCGGUCAAACAUUCGAUGUGAUAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235520.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||||=||||||||||||||||| targets:6   UUAGUCUCUAUCACAUCGAAUGUU   29 Target Full Sequence	1.0	Sequence 1515 from Patent EP2985353	NA	coding protein	psRNATarget
JB163851.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||||=||||||||||||||||| targets:6   UUAGUCUCUAUCACAUCGAAUGUU   29 Target Full Sequence	1.0	Sequence 1515 from Patent EP2559767	NA	coding protein	psRNATarget
HI403390.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||||=||||||||||||||||| targets:6   UUAGUCUCUAUCACAUCGAAUGUU   29 Target Full Sequence	1.0	Sequence 1515 from Patent EP2074227	NA	coding protein	psRNATarget
HI403332.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:6   UUAGCCCCUAUCACAUCGAAUGUU   29 Target Full Sequence	0.0	Sequence 1457 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235462.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:6   UUAGCCCCUAUCACAUCGAAUGUU   29 Target Full Sequence	0.0	Sequence 1457 from Patent EP2985353	NA	coding protein	psRNATarget
JB163793.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:6   UUAGCCCCUAUCACAUCGAAUGUU   29 Target Full Sequence	0.0	Sequence 1457 from Patent EP2559767	NA	coding protein	psRNATarget
BT065587.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:337   UUAGCCCCUAUCACAUCGAAUGUU   360 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0316E21 mRNA, complete cds	NA	coding protein	psRNATarget
EU968043.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:1418   UUAGCCCCUAUCACAUCGAAUGUU   1441 Target Full Sequence	0.0	Zea mays clone 313378 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152444.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:837   UUAGCCCCUAUCACAUCGAAUGUU   860 Target Full Sequence	0.0	Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA	NA	coding protein	psRNATarget
BT054237.2	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:837   UUAGCCCCUAUCACAUCGAAUGUU   860 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667260.2	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:1986   UUAGCCCCUAUCACAUCGAAUGUU   2009 Target Full Sequence	0.0	PREDICTED: Zea mays allene oxide synthase 1, chloroplastic (LOC103644066), mRNA	NA	coding protein	psRNATarget
EU949360.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:664   UUAGCCCCUAUCACAUCGAAUGUU   687 Target Full Sequence	0.0	Zea mays clone 403134 mRNA sequence	NA	coding protein	psRNATarget
XM_008656975.2	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*||||||||||||||||||| targets:658   UUAGCCCCUAUCACAUCGAAUGUU   681 Target Full Sequence	0.0	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA	NA	coding protein	psRNATarget
HI403388.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*=|||||||||||||||||| targets:6   UUAGCUCCUAUCACAUCGAAUGUU   29 Target Full Sequence	1.0	Sequence 1513 from Patent EP2074227	NA	coding protein	psRNATarget
JB163849.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*=|||||||||||||||||| targets:6   UUAGCUCCUAUCACAUCGAAUGUU   29 Target Full Sequence	1.0	Sequence 1513 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235518.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||*=|||||||||||||||||| targets:6   UUAGCUCCUAUCACAUCGAAUGUU   29 Target Full Sequence	1.0	Sequence 1513 from Patent EP2985353	NA	coding protein	psRNATarget
AY104898.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||-||||=|||=|||||||||| targets:1192   UUAG-CCCUGUCAUAUCGAAUGUU   1214 Target Full Sequence	2.5	Zea mays PCO078090 mRNA sequence	NA	coding protein	psRNATarget
BT036886.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||-||||=|||=|||||||||| targets:1184   UUAG-CCCUGUCAUAUCGAAUGUU   1206 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0146B11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139394.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   ||||-||||=|||=|||||||||| targets:1184   UUAG-CCCUGUCAUAUCGAAUGUU   1206 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194359 (pco078090), mRNA	NA	coding protein	psRNATarget
EU964118.1	ncRNA:24   AAUCAGGGAU---AGUGUAGCUUACAA   1   |*||||||||---|||||||||||||| targets:1235   UAAGUCCCUAGGUUCACAUCGAAUGUU   1261 Target Full Sequence	3.0	Zea mays clone 276062 plant-specific domain TIGR01570 family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156177.1	ncRNA:24   AAUCAGGGAU---AGUGUAGCUUACAA   1   |*||||||||---|||||||||||||| targets:1235   UAAGUCCCUAGGUUCACAUCGAAUGUU   1261 Target Full Sequence	3.0	Zea mays plant-specific domain TIGR01570 family protein (LOC100283275), mRNA	NA	coding protein	psRNATarget
EU943366.1	ncRNA:24   AAUCAGGGAUAGUGUAGCUUACAA   1   |||||*|*|=|||||||||||||| targets:2053   UUAGUACAUGUCACAUCGAAUGUU   2076 Target Full Sequence	3.0	Zea mays clone 1614195 mRNA sequence	NA	coding protein	psRNATarget