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BaseInfo

ncRNA ID novel_zma_miR198
Species Zea mays
Class miRNA
Genome position Chr4:236504597-236504674 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089715;SRR2089701
Length 24
Mature sequence(if miRNA) 55 - AGGAUUGAAGGGGAUUGAGGGGGA - 78
Stem-loop(if miRNA) --       A                   ---AUG   GA
  AGGAUUG AGGGGAUUGAGGGGGAAAU      AUU  G
  ||||||| |||||||||||||||||||      |||  G
  UCCUAAC UCCCCUAACUCUCUCUUUA      UAA  G
AC       C                   AUCAAA   AG
Stem-loop sequence AGGAUUGAAGGGGAUUGAGGGGGAAAUAUGAUUGAGGGGAAAUAAACUAAUUUCUCUCUCAAUCCCCUCCAAUCCUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409663.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||=||||||||||||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

1.0 Sequence 7788 from Patent EP2074227 NA coding protein psRNATarget
JB170124.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||=||||||||||||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

1.0 Sequence 7788 from Patent EP2559767 NA coding protein psRNATarget
LQ241793.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||=||||||||||||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

1.0 Sequence 7788 from Patent EP2985353 NA coding protein psRNATarget
EU961132.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||=||||||||||||||||
targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844

1.0 Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds NA coding protein psRNATarget
BT040716.2
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||=||||||||||||||||
targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883

1.0 Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds NA coding protein psRNATarget
BT066291.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||=||||||||||||||||
targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888

1.0 Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds NA coding protein psRNATarget
NM_001147738.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||=||||||||||||||||
targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888

1.0 Zea mays putative glutathione peroxidase (LOC100273297), mRNA NA coding protein psRNATarget
HI402991.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=||||||||||||||||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

1.0 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
JB163452.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=||||||||||||||||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

1.0 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
LQ235121.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=||||||||||||||||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

1.0 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||||||||||||||||*|||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
JB163954.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||||||||||||||||*|||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
HI403493.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||||||||||||||||*|||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235405.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||*||||||=|||||||||
targets:69   UCCCCCUGAAUCCCUUUCAAUCCU   92

2.5 Sequence 1400 from Patent EP2985353 NA coding protein psRNATarget
JB163736.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||*||||||=|||||||||
targets:69   UCCCCCUGAAUCCCUUUCAAUCCU   92

2.5 Sequence 1400 from Patent EP2559767 NA coding protein psRNATarget
HI403275.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||||||*||||||=|||||||||
targets:69   UCCCCCUGAAUCCCUUUCAAUCCU   92

2.5 Sequence 1400 from Patent EP2074227 NA coding protein psRNATarget
HI403355.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |=|=||||||||||||*|||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
LQ235485.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |=|=||||||||||||*|||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
JB163816.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |=|=||||||||||||*|||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
BT088155.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=|=|||||||||||*|||||||
targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486

1.5 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
NM_001317055.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=||||||=||||||||||||*|
targets:1498   UCUCCCUCAGUCCCCUUCAAUCAU   1521

2.5 Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA NA coding protein psRNATarget
BT042257.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=||||||=||||||||||||*|
targets:1498   UCUCCCUCAGUCCCCUUCAAUCAU   1521

2.5 Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds NA coding protein psRNATarget
EU942844.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||*|||||||||=|||||||||*
targets:195   UCCACCUCAAUCCUCUUCAAUCCC   218

2.5 Zea mays clone 1540330 mRNA sequence NA coding protein psRNATarget
EU942844.1
ncRNA:24   AGGGGGAGUU-AGGGGAAGUUAGGA   1
  ******||||-||||||||||||||
targets:132   GGAAAAUCAAAUCCCCUUCAAUCCU   156

3.0 Zea mays clone 1540330 mRNA sequence NA coding protein psRNATarget
EZ069159.1
ncRNA:24   AGGGGGAG-UUAGGGGAAGUUAGGA   1
  |=||=|||-|||||||||||||||*
targets:57   UUCCUCUCCAAUCCCCUUCAAUCCC   81

3.0 TSA: Zea mays contig04794, mRNA sequence NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |==||||=||||||||*|||||||
targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100

2.5 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  *||||||||||||||*|||||||*
targets:1963   ACCCCCUCAAUCCCCCUCAAUCCA   1986

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
BT038305.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||*=|||||||||=||||||||*
targets:611   UCCAUCUCAAUCCCUUUCAAUCCC   634

2.5 Zea mays full-length cDNA clone ZM_BFb0224P03 mRNA, complete cds NA coding protein psRNATarget
EZ055746.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |=|*||||||||||||*|||||||
targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98

1.5 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
XM_020541843.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||*=|||||||||=||||||||*
targets:1616   UCCAUCUCAAUCCCUUUCAAUCCC   1639

2.5 PREDICTED: Zea mays putative actin family protein (LOC100191561), transcript variant X1, mRNA NA coding protein psRNATarget
AY110351.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |=|*||||||||||||*|||||||
targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64

1.5 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
XM_020545649.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||*||||||*|||||||||||||*
targets:715   UCACCCUCAUUCCCCUUCAAUCCC   738

2.0 PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA NA coding protein psRNATarget
LQ235420.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=|*|||||||||||*||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
JB163751.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=|*|||||||||||*||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
HI403290.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  ||=|*|||||||||||*||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
BT069589.2
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |||=|**||||||||||||||||*
targets:1023   UCCUCACCAAUCCCCUUCAAUCCA   1046

3.0 Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds NA coding protein psRNATarget
LQ241947.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  *||*|||||||||||*|||||||*
targets:74   ACCACCUCAAUCCCCCUCAAUCCA   97

2.5 Sequence 7942 from Patent EP2985353 NA coding protein psRNATarget
HI409817.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  *||*|||||||||||*|||||||*
targets:74   ACCACCUCAAUCCCCCUCAAUCCA   97

2.5 Sequence 7942 from Patent EP2074227 NA coding protein psRNATarget
JB170278.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  *||*|||||||||||*|||||||*
targets:74   ACCACCUCAAUCCCCCUCAAUCCA   97

2.5 Sequence 7942 from Patent EP2559767 NA coding protein psRNATarget
NM_001320255.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  |*=|=||*|||=||||||||||||
targets:1314   UGUCUCUAAAUUCCCUUCAAUCCU   1337

2.5 Zea mays hypothetical protein (LOC100276558), transcript variant 1, mRNA NA coding protein psRNATarget
BT017823.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  *=**|||||||||=|||||||||*
targets:852   AUGGCCUCAAUCCUCUUCAAUCCA   875

2.5 Zea mays clone EL01N0508B10.c mRNA sequence NA coding protein psRNATarget
EU955707.1
ncRNA:24   AGGGGGAGUUAGGGGAAGUUAGGA   1
  *|||*||||||||||*|||||||*
targets:600   ACCCACUCAAUCCCCCUCAAUCCA   623

2.5 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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