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BaseInfo

ncRNA ID	novel_zma_miR194
Species	Zea mays
Class	miRNA
Genome position	Chr4:244701221-244701304 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089698;SRR2089703;SRR2089705;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	61 - GUGGAUUGGAUGGUAUUGAGUCGG - 84
Stem-loop(if miRNA)	--          UG        UC  U    AUCUAUUGCAA   GUGGAUUGGA  GUAUUGAG  GG UUAA           G   ||||||||||  ||||||||  || ||||   CAUCUAAUUU  CAUAACUU  UC AAUU           U UA          CA        UA  U    CUAUCUAAAAC
Stem-loop sequence	GUGGAUUGGAUGGUAUUGAGUCGGUUUAAAUCUAUUGCAAGUCAAAAUCUAUCUUAAUCUAUUUCAAUACACUUUAAUCUACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551219.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |||||||||||||||||||||||| targets:287   CCGACUCAAUACCAUCCAAUCCAC   310 Target Full Sequence	0.0	PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA	NA	coding protein	psRNATarget
BT041309.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |||||||||||=|||||||||||| targets:103   CCGACUCAAUAUCAUCCAAUCCAC   126 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152495.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |||||||||||||||=|||||||| targets:1127   CCGACUCAAUACCAUUCAAUCCAC   1150 Target Full Sequence	1.5	Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA	NA	coding protein	psRNATarget
BT054344.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |||||||||||||||=|||||||| targets:1127   CCGACUCAAUACCAUUCAAUCCAC   1150 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350737.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |=||||||||||||||=||||||| targets:4049   CUGACUCAAUACCAUCUAAUCCAC   4072 Target Full Sequence	1.5	Zea mays phospholipase D family protein (LOC100272416), mRNA	NA	coding protein	psRNATarget
EU970241.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ||||||||||||||*||||||||| targets:1119   CCGACUCAAUACCAGCCAAUCCAC   1142 Target Full Sequence	1.5	Zea mays clone 342550 mRNA sequence	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   *||||||||||=|||||||||||= targets:5879   ACGACUCAAUAUCAUCCAAUCCAU   5902 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   *||||||||||=|||||||||||= targets:5941   ACGACUCAAUAUCAUCCAAUCCAU   5964 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542631.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   *||||||||||=|||||||||||= targets:6356   ACGACUCAAUAUCAUCCAAUCCAU   6379 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |**||||||||=|||||||||||| targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163 Target Full Sequence	1.5	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
JB167116.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |**||||||||=|||||||||||| targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163 Target Full Sequence	1.5	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |**||||||||=|||||||||||| targets:140   CAAACUCAAUAUCAUCCAAUCCAC   163 Target Full Sequence	1.5	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   GGCU-------GAGUUAUGGUAGGUUAGGUG   1   ||||-------||||||*||||||||||||| targets:1436   CCGAACAAGCCCUCAAUCCCAUCCAAUCCAC   1466 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661191.2	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ||*|||||||*||||||||||||* targets:65   CCAACUCAAUUCCAUCCAAUCCAA   88 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RING1-like (LOC103638198), mRNA	NA	coding protein	psRNATarget
XM_008660174.2	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   |=*|||||||*||||||||||=|| targets:3590   CUCACUCAAUCCCAUCCAAUCUAC   3613 Target Full Sequence	2.5	PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU974368.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ==**=||||||=|||||||||||| targets:1242   UUUUUUCAAUAUCAUCCAAUCCAC   1265 Target Full Sequence	1.5	Zea mays clone 447232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ||*||*||||*||||||||||||| targets:551   CCCACCCAAUCCCAUCCAAUCCAC   574 Target Full Sequence	2.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
AY106055.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ==*|||=|||||||*||||||||| targets:979   UUAACUUAAUACCACCCAAUCCAC   1002 Target Full Sequence	2.5	Zea mays PCO115884 mRNA sequence	NA	coding protein	psRNATarget
EU976164.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ==*|||=|||||||*||||||||| targets:983   UUAACUUAAUACCACCCAAUCCAC   1006 Target Full Sequence	2.5	Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
NM_001159099.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ==*|||=|||||||*||||||||| targets:983   UUAACUUAAUACCACCCAAUCCAC   1006 Target Full Sequence	2.5	Zea mays mitochondrial glycoprotein (LOC100286211), mRNA	NA	coding protein	psRNATarget
EU970019.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ||--=|||=|*||||||||||||| targets:357   CC--UUCAGUUCCAUCCAAUCCAC   378 Target Full Sequence	2.0	Zea mays clone 338610 FIP1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157781.1	ncRNA:24   GGCUGAGUUAUGGUAGGUUAGGUG   1   ||--=|||=|*||||||||||||| targets:357   CC--UUCAGUUCCAUCCAAUCCAC   378 Target Full Sequence	2.0	Zea mays uncharacterized LOC100284886 (gpm51), mRNA	NA	coding protein	psRNATarget