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BaseInfo

ncRNA ID novel_zma_miR190
Species Zea mays
Class miRNA
Genome position Chr4:224972560-224972686 [+]
Reference genome RefGen_v4
Source SRR1583943;SRR1583944
Length 24
Mature sequence(if miRNA) 104 - ACCACUAGUAACCGAACAUGGCCU - 127
Stem-loop(if miRNA) --   -              G  A   GA           A                      A
  GCU UGUUCGGUUGCUAG GG UUG  GGGGAUUGAAG GGAUUAAAUCCCCUCCUAUUCA U
  ||| |||||||||||||| || |||  ||||||||||| ||||||||||||||||||||||
  CGG ACAAGCCAAUGAUC CC AAC  CCCCUAACUUC CCUAAUUUAGGGGAGGAUAAGU U
UC   U              A  A   UC           C                      U
Stem-loop sequence GCUUGUUCGGUUGCUAGGGGAUUGGAGGGGAUUGAAGAGGAUUAAAUCCCCUCCUAUUCAAUUUUGAAUAGGAGGGGAUUUAAUCCCCUUCAAUCCCCCUCAAACCACUAGUAACCGAACAUGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ059519.1
ncRNA:24   UCCGGUACAAGCCAAUGAUCACCA   1
  ||||||*|||||||||||||||||
targets:410   AGGCCACGUUCGGUUACUAGUGGU   433

1.0 TSA: Zea mays contig60641, mRNA sequence NA coding protein psRNATarget