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BaseInfo

ncRNA ID osa-miR5077
Species Oryza sativa
Class miRNA
Genome position Chr3:14094752-14094842 [+]
Reference genome MSU7
Source miRBase
Length 19
Mature sequence(if miRNA) 13 - GUUCGCGUCGGGUUCACCA - 31
Stem-loop(if miRNA) UGCCUUU      UU G      - UU A  -AG  AG   G   G
       UCGUUG  C CGUCGG G  C CC   CU  GUG UUC C
       ||||||  | |||||| |  | ||   ||  ||| ||| C
       AGCAAC  G GCGGCC C  G GG   GG  CAU AAG A
CAGCAGU      CU A      G UG -  GAA  -A   G   U
Stem-loop sequence UGCCUUUUCGUUGUUCGCGUCGGGUUCACCAGCUAGGUGGUUCGCCAUGAAGUACAGGAAGGGGGUCGCCGGCGAGUCCAACGAUGACGAC

Reference

1 PMID:21352554
"Discovery of barley miRNAs through deep sequencing of short reads";
Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U;
BMC Genomics. 12:129(2011).