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BaseInfo

ncRNA ID novel_zma_miR189
Species Zea mays
Class miRNA
Genome position Chr4:235116858-235116939 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089712;SRR2089713;SRR2287159
Length 24
Mature sequence(if miRNA) 59 - UGGUAAUUUUAGAACUAAAAUGGA - 82
Stem-loop(if miRNA) --UU       -   U          -               
    UUUUAGU CUA AAAUUGCUAA UAUAGAAACUAAAAUA
    ||||||| ||| |||||||||| |||||||||||||||A
    AAAAUCA GAU UUUAAUGGUU AUAUCUUUGAUUUUGA
AGGU       A   -          U               
Stem-loop sequence UUUUUUAGUCUAUAAAUUGCUAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGGUAAUUUUAGAACUAAAAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ060524.1
ncRNA:24   AGGUAAAAUCAAGAUUUUAAUGGU   1
  ||=||||||||||*||||||||||
targets:87   UCUAUUUUAGUUCCAAAAUUACCA   110

1.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget