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BaseInfo

ncRNA ID	novel_zma_miR186
Species	Zea mays
Class	miRNA
Genome position	Chr4:212218486-212218616 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2287031;SRR2287159;SRR2287164;SRR2287165;SRR5451003;SRR5451005;SRR5451006;SRR2089701;SRR2089703
Length	24
Mature sequence(if miRNA)	1 - AGGCCUUGUUGGUUUGUGUCGGAU - 24
Stem-loop(if miRNA)	---          G    G          --CAC       C     ACCUAA  A AUUUUAUAUAAAU    AGGCCUUGUU GUUU UGUCGGAUUG     CCGGAAU GUUCC      UC A             U    |||||||||| |||| ||||||||||     ||||||| |||||      || |    UCCGGAACAA CAAA ACAGCCUAAC     GGCCUUG UAAGG      UU G             A GAU          G    G          CACAC       C     -----A  - GCCUAACGAAGAG
Stem-loop sequence	AGGCCUUGUUGGUUUGUGUCGGAUUGCACCCGGAAUCGUUCCACCUAAUCAAAUUUUAUAUAAAUUAGAGAAGCAAUCCGGUUAGGAAUCGUUCCGGCACACCAAUCCGACAGAAACGAACAAGGCCUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405904.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:105   AUCCGACACAAACGAACAAGGCCU   128 Target Full Sequence	1.5	Sequence 4029 from Patent EP2074227	NA	coding protein	psRNATarget
JB166387.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:105   AUCCGACACAAACGAACAAGGCCU   128 Target Full Sequence	1.5	Sequence 4051 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238056.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:105   AUCCGACACAAACGAACAAGGCCU   128 Target Full Sequence	1.5	Sequence 4051 from Patent EP2985353	NA	coding protein	psRNATarget
JB166365.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:105   AUCCGACACAAACGAACAAGGCCU   128 Target Full Sequence	1.5	Sequence 4029 from Patent EP2559767	NA	coding protein	psRNATarget
HI405926.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:105   AUCCGACACAAACGAACAAGGCCU   128 Target Full Sequence	1.5	Sequence 4051 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238034.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:105   AUCCGACACAAACGAACAAGGCCU   128 Target Full Sequence	1.5	Sequence 4029 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238069.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:111   AUCCGACACAAACAAACAAGGCCU   134 Target Full Sequence	1.5	Sequence 4064 from Patent EP2985353	NA	coding protein	psRNATarget
JB166400.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:111   AUCCGACACAAACAAACAAGGCCU   134 Target Full Sequence	1.5	Sequence 4064 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238066.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:111   AUCCGACACAAACGAACAAGGCCU   134 Target Full Sequence	1.5	Sequence 4061 from Patent EP2985353	NA	coding protein	psRNATarget
JB166397.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:111   AUCCGACACAAACGAACAAGGCCU   134 Target Full Sequence	1.5	Sequence 4061 from Patent EP2559767	NA	coding protein	psRNATarget
HI405936.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:111   AUCCGACACAAACGAACAAGGCCU   134 Target Full Sequence	1.5	Sequence 4061 from Patent EP2074227	NA	coding protein	psRNATarget
HI405939.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:111   AUCCGACACAAACAAACAAGGCCU   134 Target Full Sequence	1.5	Sequence 4064 from Patent EP2074227	NA	coding protein	psRNATarget
HI405933.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:114   AUCCGACACAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 4058 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238063.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:114   AUCCGACACAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 4058 from Patent EP2985353	NA	coding protein	psRNATarget
JB166394.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:114   AUCCGACACAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 4058 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238062.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:114   AUCCGACACAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 4057 from Patent EP2985353	NA	coding protein	psRNATarget
JB166393.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:114   AUCCGACACAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 4057 from Patent EP2559767	NA	coding protein	psRNATarget
HI405932.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:114   AUCCGACACAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 4057 from Patent EP2074227	NA	coding protein	psRNATarget
JB167699.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:115   AUCCGACACAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 5363 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239368.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:115   AUCCGACACAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 5363 from Patent EP2985353	NA	coding protein	psRNATarget
HI407238.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:115   AUCCGACACAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 5363 from Patent EP2074227	NA	coding protein	psRNATarget
EU942882.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:175   AUCCGACACAAACGAACAAGGCCU   198 Target Full Sequence	1.5	Zea mays clone 1543225 mRNA sequence	NA	coding protein	psRNATarget
EU971977.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:827   AUCCGACACAAACGAACAAGGCCU   850 Target Full Sequence	1.5	Zea mays clone 373036 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU973171.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:758   AUCCGACACAAACGAACAAGGCCU   781 Target Full Sequence	1.5	Zea mays clone 394490 mRNA sequence	NA	coding protein	psRNATarget
XM_008670105.2	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:1117   AUCCGACACAAACGAACAAGGCCU   1140 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382252 (LOC100382252), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035415.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:1522   AUCCGACACAAACGAACAAGGCCU   1545 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138362.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:1522   AUCCGACACAAACGAACAAGGCCU   1545 Target Full Sequence	1.5	Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA	NA	coding protein	psRNATarget
XM_020549216.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:242   AUCCGACACAAACGAACAAGGCCU   265 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA	NA	coding protein	psRNATarget
NM_001175005.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:1759   AUCCGACACAAACGAACAAGGCCU   1782 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA	NA	coding protein	psRNATarget
BT063644.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:1759   AUCCGACACAAACGAACAAGGCCU   1782 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds	NA	coding protein	psRNATarget
EU973341.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:1829   AUCCGACACAAACGAACAAGGCCU   1852 Target Full Sequence	1.5	Zea mays clone 397038 catalytic/ protein phosphatase type 2C mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158559.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:1829   AUCCGACACAAACGAACAAGGCCU   1852 Target Full Sequence	1.5	Zea mays uncharacterized LOC100285668 (IDP752), mRNA	NA	coding protein	psRNATarget
XM_020538654.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:867   AUCCGACACAAACGAACAAGGCCU   890 Target Full Sequence	1.5	PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538690.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||||||||||*|||||||||| targets:4222   AUCCGACACAAACGAACAAGGCCU   4245 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103627710), mRNA	NA	coding protein	psRNATarget
JB166398.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:106   AUCCGGCACAAACGAACAAGGCCU   129 Target Full Sequence	2.5	Sequence 4062 from Patent EP2559767	NA	coding protein	psRNATarget
HI405937.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:106   AUCCGGCACAAACGAACAAGGCCU   129 Target Full Sequence	2.5	Sequence 4062 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238067.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:106   AUCCGGCACAAACGAACAAGGCCU   129 Target Full Sequence	2.5	Sequence 4062 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238094.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||||=||||||*|||||||||| targets:113   AUCCGAUACAAACGAACAAGGCCU   136 Target Full Sequence	2.5	Sequence 4089 from Patent EP2985353	NA	coding protein	psRNATarget
JB166425.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||||=||||||*|||||||||| targets:113   AUCCGAUACAAACGAACAAGGCCU   136 Target Full Sequence	2.5	Sequence 4089 from Patent EP2559767	NA	coding protein	psRNATarget
HI405964.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||||=||||||*|||||||||| targets:113   AUCCGAUACAAACGAACAAGGCCU   136 Target Full Sequence	2.5	Sequence 4089 from Patent EP2074227	NA	coding protein	psRNATarget
HI405948.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   =||||||||||||*|||||||||| targets:130   GUCCGACACAAACGAACAAGGCCU   153 Target Full Sequence	1.5	Sequence 4073 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238078.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   =||||||||||||*|||||||||| targets:130   GUCCGACACAAACGAACAAGGCCU   153 Target Full Sequence	1.5	Sequence 4073 from Patent EP2985353	NA	coding protein	psRNATarget
JB166409.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   =||||||||||||*|||||||||| targets:130   GUCCGACACAAACGAACAAGGCCU   153 Target Full Sequence	1.5	Sequence 4073 from Patent EP2559767	NA	coding protein	psRNATarget
JB167800.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:131   AUCCGGCACAAACGAACAAGGCCU   154 Target Full Sequence	2.5	Sequence 5464 from Patent EP2559767	NA	coding protein	psRNATarget
HI407339.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:131   AUCCGGCACAAACGAACAAGGCCU   154 Target Full Sequence	2.5	Sequence 5464 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239469.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:131   AUCCGGCACAAACGAACAAGGCCU   154 Target Full Sequence	2.5	Sequence 5464 from Patent EP2985353	NA	coding protein	psRNATarget
HI405871.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:24   AUCCGGCACAAACGAACAAGGCCU   47 Target Full Sequence	2.5	Sequence 3996 from Patent EP2074227	NA	coding protein	psRNATarget
JB166332.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:24   AUCCGGCACAAACGAACAAGGCCU   47 Target Full Sequence	2.5	Sequence 3996 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238001.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:24   AUCCGGCACAAACGAACAAGGCCU   47 Target Full Sequence	2.5	Sequence 3996 from Patent EP2985353	NA	coding protein	psRNATarget
EZ516643.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:239   AUCCGGCACAAACGAACAAGGCCU   262 Target Full Sequence	2.5	TSA: Zea mays cultivar W22 CL45Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
EU941248.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:218   AUCCGGCACAAACGAACAAGGCCU   241 Target Full Sequence	2.5	Zea mays clone 1431203 mRNA sequence	NA	coding protein	psRNATarget
XM_020540976.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |||||=|||||||*|||||||||| targets:4516   AUCCGGCACAAACGAACAAGGCCU   4539 Target Full Sequence	2.5	PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676360.2	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||||||*||||*|||||||||| targets:1925   AUCCGACAGAAACGAACAAGGCCU   1948 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676377.2	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||||||*||||*|||||||||| targets:1999   AUCCGACAGAAACGAACAAGGCCU   2022 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676366.2	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||||||*||||*|||||||||| targets:2017   AUCCGACAGAAACGAACAAGGCCU   2040 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676374.2	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||||||*||||*|||||||||| targets:2093   AUCCGACAGAAACGAACAAGGCCU   2116 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||*||||||||*|||||||||| targets:3533   AUCCAACACAAACGAACAAGGCCU   3556 Target Full Sequence	1.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||||*||||||||*|||||||||| targets:3533   AUCCAACACAAACGAACAAGGCCU   3556 Target Full Sequence	1.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU948094.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||=|*||||||||*|||||||||* targets:252   AUUCUACACAAACGAACAAGGCCC   275 Target Full Sequence	2.5	Zea mays clone 369716 mRNA sequence	NA	coding protein	psRNATarget
BT035086.2	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||=|*||||||||*|||||||||* targets:1310   AUUCUACACAAACGAACAAGGCCC   1333 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0038G06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138133.2	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||=|*||||||||*|||||||||* targets:1531   AUUCUACACAAACGAACAAGGCCC   1554 Target Full Sequence	2.5	Zea mays Phosphatidylinositol:ceramide inositolphosphotransferase 1 (LOC100192955), mRNA	NA	coding protein	psRNATarget
EU956107.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   ||=|*||||||||*|||||||||* targets:1532   AUUCUACACAAACGAACAAGGCCC   1555 Target Full Sequence	2.5	Zea mays clone 1557529 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ073175.1	ncRNA:24   UAGGCUGUGUUUGGUUGUUCCGGA   1   |*||||||*||||*|||||||||| targets:63   AACCGACAGAAACGAACAAGGCCU   86 Target Full Sequence	2.5	TSA: Zea mays contig08812, mRNA sequence	NA	coding protein	psRNATarget