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BaseInfo

ncRNA ID novel_zma_miR183
Species Zea mays
Class miRNA
Genome position Chr4:205001374-205001580 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - UCAUGAUAUCAUAUGUAGAGGCUC - 24
Stem-loop(if miRNA) --                    G  C  A    UAU      A     UG        A             A       -CU   C AU      -       U
  UCAUGAUAUCAUAUGUAGAG CU UG UAAA   UUGAGA UGUUU  AGAAAGUU UCAUGCACUAUGU UAGAAAC   AGU G  CUACAU UGAAGUU U
  |||||||||||||||||||| || || ||||   |||||| |||||  |||||||| ||||||||||||| |||||||   ||| |  |||||| |||||||
  AGUACUAUAGUAUACAUCUC GA AC AUUU   AACUCU ACAAA  UUUUUCAA AGUACGUGAUACA AUCUUUG   UCA C  GAUGUG ACUUUAG A
AC                    G  U  C    UUU      G     GU        C             C       AAU   - GG      U       U
Stem-loop sequence UCAUGAUAUCAUAUGUAGAGGCUCUGAUAAAUAUUUGAGAAUGUUUUGAGAAAGUUAUCAUGCACUAUGUAUAGAAACCUAGUCGAUCUACAUUGAAGUUUUAUGAUUUCAUGUGUAGGGCACUUAAGUUUCUACACAUAGUGCAUGACAACUUUUUUGAAACAGUCUCAAUUUUUUACCAUAGGCUCUACAUAUGAUAUCAUGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ089840.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *||||||||||||||||||||||=
targets:2   CAGCCUCUACAUAUGAUAUCAUGG   25

1.0 TSA: Zea mays contig25486, mRNA sequence NA coding protein psRNATarget
JB163670.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|||||||||||||||||||||**
targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229

2.5 Sequence 1334 from Patent EP2559767 NA coding protein psRNATarget
HI403209.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|||||||||||||||||||||**
targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229

2.5 Sequence 1334 from Patent EP2074227 NA coding protein psRNATarget
LQ235339.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|||||||||||||||||||||**
targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229

2.5 Sequence 1334 from Patent EP2985353 NA coding protein psRNATarget
HI403222.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|*||||||=||||||||||||||
targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223

1.0 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget
LQ235352.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|*||||||=||||||||||||||
targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223

1.0 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
JB163683.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|*||||||=||||||||||||||
targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223

1.0 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
XM_020546111.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *||=|*||||||||||||||||||
targets:4025   UAGUCGCUACAUAUGAUAUCAUGA   4048

1.0 PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA NA coding protein psRNATarget
LQ235350.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|*|||*|||||||||||||||||
targets:200   CAACCUGUACAUAUGAUAUCAUGA   223

1.0 Sequence 1345 from Patent EP2985353 NA coding protein psRNATarget
JB163681.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|*|||*|||||||||||||||||
targets:200   CAACCUGUACAUAUGAUAUCAUGA   223

1.0 Sequence 1345 from Patent EP2559767 NA coding protein psRNATarget
HI403220.1
ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1
  *|*|||*|||||||||||||||||
targets:200   CAACCUGUACAUAUGAUAUCAUGA   223

1.0 Sequence 1345 from Patent EP2074227 NA coding protein psRNATarget