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BaseInfo

ncRNA ID	novel_zma_miR181
Species	Zea mays
Class	miRNA
Genome position	Chr4:193107885-193108033 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	126 - CGUCUUAUAAUUUGGAUUGGUGGG - 149
Stem-loop(if miRNA)	-- U  GU      A               -------------CUCUUA     -------    U  UUUUGCUAUGUAUCUAG   C CU  UCCAAA UAUAAGACGUUUUGA                   UAGAU       ACAU GC                 A   | ||  |||||| |||||||||||||||                   |||||       |||| ||   G GG  AGGUUU AUAUUCUGCAAAGCU                   UGUAU       GAUA UG                 C GG U  UU      A               ACAAAACCGAAAAGUUCAA     UAAAAAC    -  UGAAUCUAUAUGUCAUA
Stem-loop sequence	CUCUGUUCCAAAAUAUAAGACGUUUUGACUCUUAUAGAUACAUUGCUUUUGCUAUGUAUCUAGACAUACUGUAUAUCUAAGUGUAUAGCAAAAAUUAUGUAACUUGAAAAGCCAAAACAUCGAAACGUCUUAUAAUUUGGAUUGGUGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ245848.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   ||=||=|=|||||||||||||||| targets:620   CCUACUAGUCCAAAUUAUAAGACG   643 Target Full Sequence	2.0	Zea mays clone 20845 mRNA sequence	NA	coding protein	psRNATarget
XM_020545934.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   |||*=||*|||||||||||||||* targets:2085   CCCUUCACUCCAAAUUAUAAGACU   2108 Target Full Sequence	2.0	PREDICTED: Zea mays protein DENND6B (LOC103633980), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001175293.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   =||*=|=*|||||||||||||||| targets:1261   UCCUUCGUUCCAAAUUAUAAGACG   1284 Target Full Sequence	2.0	Zea mays uncharacterized LOC100276357 (LOC100276357), mRNA	NA	coding protein	psRNATarget
BT064755.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   =||*=|=*|||||||||||||||| targets:1261   UCCUUCGUUCCAAAUUAUAAGACG   1284 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0114E15 mRNA, complete cds	NA	coding protein	psRNATarget
EU961593.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   =||*=|=*|||||||||||||||| targets:1198   UCCUUCGUUCCAAAUUAUAAGACG   1221 Target Full Sequence	2.0	Zea mays clone 236813 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ109508.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   |||-=|=*|||||||||||||||| targets:20   CCC-UCGUUCCAAAUUAUAAGACG   42 Target Full Sequence	2.0	TSA: Zea mays contig45167, mRNA sequence	NA	coding protein	psRNATarget
NM_001156702.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   *||-|||*|||||||||*|||||| targets:1284   ACC-CCAUUCCAAAUUAGAAGACG   1306 Target Full Sequence	2.5	Zea mays diacylglycerol O-acyltransferase 1 (LOC100283803), mRNA	NA	coding protein	psRNATarget
EU966004.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   *||-|||*|||||||||*|||||| targets:1284   ACC-CCAUUCCAAAUUAGAAGACG   1306 Target Full Sequence	2.5	Zea mays clone 290705 diacylglycerol O-acyltransferase 1 mRNA, complete cds	NA	coding protein	psRNATarget
EU968170.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   *||-|||*|||||||||*|||||| targets:1208   ACC-CCAUUCCAAAUUAGAAGACG   1230 Target Full Sequence	2.5	Zea mays clone 316012 diacylglycerol O-acyltransferase 1 mRNA, complete cds	NA	coding protein	psRNATarget
AY108910.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   *||-|||*|||||||||*|||||| targets:669   ACC-CCAUUCCAAAUUAGAAGACG   691 Target Full Sequence	2.5	Zea mays PCO141037 mRNA sequence	NA	coding protein	psRNATarget
EZ111663.1	ncRNA:24   GGGUGGUUAGGUUUAAUAUUCUGC   1   *||-|||*|||||||||*|||||| targets:231   ACC-CCAUUCCAAAUUAGAAGACG   253 Target Full Sequence	2.5	TSA: Zea mays contig47324, mRNA sequence	NA	coding protein	psRNATarget