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BaseInfo

ncRNA ID	novel_zma_miR179
Species	Zea mays
Class	miRNA
Genome position	Chr10:113722897-113723025 [+]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	106 - GUGAUGAUCUUUUAAUGGUAUGGA - 129
Stem-loop(if miRNA)	--                 CAA         A        GG  CCCAC  G     GACU      A   UAUACCAUUAAAAGAUC   ACUUUAGAU UAUAUCAU  AC     AU UCAUU    CAUGUG A   |||||||||||||||||   ||||||||| ||||||||  ||     || |||||    ||||||   GUAUGGUAAUUUUCUAG   UGAAAUCUA GUAUGGUA  UG     UA AGUGA    GUACAC C AG                 UAG         G        -A  ----A  G     --AU      C
Stem-loop sequence	UAUACCAUUAAAAGAUCCAAACUUUAGAUAUAUAUCAUGGACCCCACAUGUCAUUGACUCAUGUGAACCCACAUGUAAGUGAGAUAGUAAUGGUAUGGAUCUAAAGUGAUGAUCUUUUAAUGGUAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008656647.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:519   UCCAUACCAUUAAAAGAUCACCAC   542 Target Full Sequence	1.5	PREDICTED: Zea mays Jasmonic acid-amido synthetase JAR1 (pco121700), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008663819.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:2530   UCCAUACCAUUAAAAGAUCACCAC   2553 Target Full Sequence	1.5	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC103640598), mRNA	NA	coding protein	psRNATarget
EU957674.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:1447   UCCAUACCAUUAAAAGAUCACCAC   1470 Target Full Sequence	1.5	Zea mays clone 1602824 mRNA sequence	NA	coding protein	psRNATarget
BT018806.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:978   UCCAUACCAUUAAAAGAUCACCAC   1001 Target Full Sequence	1.5	Zea mays clone EL01N0529G07.d mRNA sequence	NA	coding protein	psRNATarget
XM_008647507.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:1099   UCCAUACCAUUAAAAGAUCACCAC   1122 Target Full Sequence	1.5	PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647508.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:1089   UCCAUACCAUUAAAAGAUCACCAC   1112 Target Full Sequence	1.5	PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT061333.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:36   UCCAUACCAUUAAAAGAUCACCAC   59 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0136G21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647506.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:1013   UCCAUACCAUUAAAAGAUCACCAC   1036 Target Full Sequence	1.5	PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539543.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:1142   UCCAUACCAUUAAAAGAUCACCAC   1165 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY103623.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:620   UCCAUACCAUUAAAAGAUCACCAC   643 Target Full Sequence	1.5	Zea mays PCO141453 mRNA sequence	NA	coding protein	psRNATarget
XM_008651355.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:1122   UCCAUACCAUUAAAAGAUCACCAC   1145 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001150698.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:592   UCCAUACCAUUAAAAGAUCACCAC   615 Target Full Sequence	1.5	Zea mays hypothetical protein (pco141453a), mRNA	NA	coding protein	psRNATarget
EU966308.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:592   UCCAUACCAUUAAAAGAUCACCAC   615 Target Full Sequence	1.5	Zea mays clone 293420 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU962525.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:591   UCCAUACCAUUAAAAGAUCACCAC   614 Target Full Sequence	1.5	Zea mays clone 243450 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968126.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:655   UCCAUACCAUUAAAAGAUCACCAC   678 Target Full Sequence	1.5	Zea mays clone 314826 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150925.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:654   UCCAUACCAUUAAAAGAUCACCAC   677 Target Full Sequence	1.5	Zea mays uncharacterized LOC100277330 (LOC100277330), mRNA	NA	coding protein	psRNATarget
EU951591.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:336   UCCAUACCAUUAAAAGAUCACCAC   359 Target Full Sequence	1.5	Zea mays clone 896699 mRNA sequence	NA	coding protein	psRNATarget
XM_008651354.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:780   UCCAUACCAUUAAAAGAUCACCAC   803 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008651356.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:752   UCCAUACCAUUAAAAGAUCACCAC   775 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651357.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:606   UCCAUACCAUUAAAAGAUCACCAC   629 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EZ104432.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||||||||||||||||*||| targets:15   UCCAUACCAUUAAAAGAUCACCAC   38 Target Full Sequence	1.5	TSA: Zea mays contig40089, mRNA sequence	NA	coding protein	psRNATarget
XM_008677619.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||=|||||||||||||*||| targets:1424   UCCAUAUCAUUAAAAGAUCACCAC   1447 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (si606074b10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677625.2	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||=|||||||||||||*||| targets:1418   UCCAUAUCAUUAAAAGAUCACCAC   1441 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (si606074b10b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT054320.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   ||||||=|||||||||||||*||| targets:1397   UCCAUAUCAUUAAAAGAUCACCAC   1420 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0296G18 mRNA, complete cds	NA	coding protein	psRNATarget
EU952279.1	ncRNA:24   AGGUAUGGUAAUUUUCUAGUAGUG   1   |=||||||||||||||||||*||| targets:630   UUCAUACCAUUAAAAGAUCACCAC   653 Target Full Sequence	1.5	Zea mays clone 1275160 mRNA sequence	NA	coding protein	psRNATarget