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BaseInfo

ncRNA ID novel_zma_miR172
Species Zea mays
Class miRNA
Genome position Chr4:158459405-158459530 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089712;SRR2089714;SRR5451003;SRR5451004;SRR5451005;SRR1997866;SRR2089701;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 103 - AGUUAGGCAGCGAACCAAACAGGC - 126
Stem-loop(if miRNA) --A           -  G      G            ---G  AAGGUUAGUCGUUCGAAUUGAA
   UGUUUGGUUCG UG CUAACU UGCCACACUUUG    CU                      G
   ||||||||||| || |||||| ||||||||||||    ||                      A
   ACAAACCAAGC AC GAUUGA ACGGUGUGAAAC    UG                      G
CGG           G  G      -            GGAU  AAAAGACGGAUUCCAAUUUGUA
Stem-loop sequence AUGUUUGGUUCGUGGCUAACUGUGCCACACUUUGGCUAAGGUUAGUCGUUCGAAUUGAAGAGAUGUUUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAAGUUAGGCAGCGAACCAAACAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT038009.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  *|||||||||||||||||||||||
targets:264   ACCUGUUUGGUUCGCUGCCUAACU   287

0.0 Zea mays full-length cDNA clone ZM_BFb0206M21 mRNA, complete cds NA coding protein psRNATarget
XM_008656231.2
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  *|||||||||||||||||||||||
targets:5227   ACCUGUUUGGUUCGCUGCCUAACU   5250

0.0 PREDICTED: Zea mays hypothetical protein (LOC100216556), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235416.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  ||*|||||||||||||||||||||
targets:4   GCAUGUUUGGUUCGCUGCCUAACU   27

0.0 Sequence 1411 from Patent EP2985353 NA coding protein psRNATarget
JB163747.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  ||*|||||||||||||||||||||
targets:4   GCAUGUUUGGUUCGCUGCCUAACU   27

0.0 Sequence 1411 from Patent EP2559767 NA coding protein psRNATarget
HI403286.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  ||*|||||||||||||||||||||
targets:4   GCAUGUUUGGUUCGCUGCCUAACU   27

0.0 Sequence 1411 from Patent EP2074227 NA coding protein psRNATarget
LQ235422.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  ||*|||||||||||||||=|||||
targets:4   GCAUGUUUGGUUCGCUGCUUAACU   27

1.5 Sequence 1417 from Patent EP2985353 NA coding protein psRNATarget
JB163753.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  ||*|||||||||||||||=|||||
targets:4   GCAUGUUUGGUUCGCUGCUUAACU   27

1.5 Sequence 1417 from Patent EP2559767 NA coding protein psRNATarget
HI403292.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  ||*|||||||||||||||=|||||
targets:4   GCAUGUUUGGUUCGCUGCUUAACU   27

1.5 Sequence 1417 from Patent EP2074227 NA coding protein psRNATarget
EU968686.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |=|||||||||||*||||||||||
targets:608   GUCUGUUUGGUUCACUGCCUAACU   631

1.5 Zea mays clone 323451 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT065161.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |=|||||||||||*||||||||||
targets:591   GUCUGUUUGGUUCACUGCCUAACU   614

1.5 Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds NA coding protein psRNATarget
XM_020550436.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |=|||||||||||*||||||||||
targets:626   GUCUGUUUGGUUCACUGCCUAACU   649

1.5 PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA NA coding protein psRNATarget
XM_008676108.2
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  ||=|||||||||||||*|||||||
targets:892   GCUUGUUUGGUUCGCUACCUAACU   915

1.5 PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
LQ235498.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |=*||||||||||||||=||||||
targets:4   GUAUGUUUGGUUCGCUGUCUAACU   27

1.5 Sequence 1493 from Patent EP2985353 NA coding protein psRNATarget
HI403368.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |=*||||||||||||||=||||||
targets:4   GUAUGUUUGGUUCGCUGUCUAACU   27

1.5 Sequence 1493 from Patent EP2074227 NA coding protein psRNATarget
JB163829.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |=*||||||||||||||=||||||
targets:4   GUAUGUUUGGUUCGCUGUCUAACU   27

1.5 Sequence 1493 from Patent EP2559767 NA coding protein psRNATarget
EU958119.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |==|||||||||||||*|||||||
targets:918   GUUUGUUUGGUUCGCUACCUAACU   941

1.5 Zea mays clone 1674247 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149797.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |==|||||||||||||*|||||||
targets:918   GUUUGUUUGGUUCGCUACCUAACU   941

1.5 Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
EZ060318.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  |=||*|||||||||||*|||||||
targets:140   GUCUUUUUGGUUCGCUACCUAACU   163

1.5 TSA: Zea mays contig61440, mRNA sequence NA coding protein psRNATarget
HI403392.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  *=*|*|||||||||||||||||||
targets:4   AUAUUUUUGGUUCGCUGCCUAACU   27

0.0 Sequence 1517 from Patent EP2074227 NA coding protein psRNATarget
LQ235522.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  *=*|*|||||||||||||||||||
targets:4   AUAUUUUUGGUUCGCUGCCUAACU   27

0.0 Sequence 1517 from Patent EP2985353 NA coding protein psRNATarget
JB163853.1
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  *=*|*|||||||||||||||||||
targets:4   AUAUUUUUGGUUCGCUGCCUAACU   27

0.0 Sequence 1517 from Patent EP2559767 NA coding protein psRNATarget
AY107944.2
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  *|||*|||||||||||||||||**
targets:843   ACCUAUUUGGUUCGCUGCCUAAAA   866

2.5 Zea mays PCO122092 mRNA sequence NA coding protein psRNATarget
XM_008662023.2
ncRNA:24   CGGACAAACCAAGCGACGGAUUGA   1
  **|||||||*|||*||||||||||
targets:2313   UACUGUUUGAUUCACUGCCUAACU   2336

2.5 PREDICTED: Zea mays uncharacterized LOC103639263 (LOC103639263), transcript variant X2, mRNA NA coding protein psRNATarget
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