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BaseInfo

ncRNA ID	osa-miR2905
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:13591894-13591974 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UACAUGUCAGUGACAAAGGCA - 31
Stem-loop(if miRNA)	-      C                           CAUUG  ACUGCA UGUGCCUUUGUCACUGACAUGUGGGCC     A  |||||| |||||||||||||||||||||||||||  UGACGU GCACGGAAACAGUGACUGUACAUCCGG     U C      A                           ACCUC
Stem-loop sequence	ACUGCACUGUGCCUUUGUCACUGACAUGUGGGCCCAUUGAUCUCCAGGCCUACAUGUCAGUGACAAAGGCACGAUGCAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015784699.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   ||||||||||||||||||||= targets:2701   UGCCUUUGUCACUGACAUGUG   2721 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 3.1-like (LOC107276905), mRNA	protein NRT1/ PTR FAMILY 3.1-like(LOC107276905)	coding protein	psRNATarget
XM_015761343.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   *||=||||||||||||||||= targets:48   AGCUUUUGUCACUGACAUGUG   68 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group biogenesis of lysosome-related organelles complex 1 subunit 1 (LOC4349586), mRNA	biogenesis of lysosome-related organelles complex 1 subunit 1(LOC4349586)	coding protein	psRNATarget
AK099933.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   ||||||*|||||||||||||= targets:2721   UGCCUUAGUCACUGACAUGUG   2741 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013119E02, full insert sequence	NA	coding protein	psRNATarget
AK119370.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   ||=||||*||||||||||||| targets:1754   UGUCUUUAUCACUGACAUGUA   1774 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-131-H09, full insert sequence	NA	coding protein	psRNATarget
AK103210.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   *|*|||||||||||||||||= targets:1233   GGACUUUGUCACUGACAUGUG   1253 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033122L17, full insert sequence	NA	coding protein	psRNATarget
XM_015786557.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   |**||||||||||*||||||| targets:1631   UAACUUUGUCACUUACAUGUA   1651 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ALTERED XYLOGLUCAN 4-like (LOC4340592), transcript variant X1, mRNA	protein ALTERED XYLOGLUCAN 4-like(LOC4340592)	coding protein	psRNATarget
XM_015786558.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   |**||||||||||*||||||| targets:1622   UAACUUUGUCACUUACAUGUA   1642 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ALTERED XYLOGLUCAN 4-like (LOC4340592), transcript variant X2, mRNA	protein ALTERED XYLOGLUCAN 4-like(LOC4340592)	coding protein	psRNATarget
AK063415.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   |**||||||||||*||||||| targets:1306   UAACUUUGUCACUUACAUGUA   1326 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-115-B08, full insert sequence	NA	coding protein	psRNATarget
AK241248.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   |*=|*|||||||||||||||= targets:789   UAUCCUUGUCACUGACAUGUG   809 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065129D17, full insert sequence	NA	coding protein	psRNATarget
AK071187.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   *||*|||*||||||||||||= targets:1826   CGCGUUUAUCACUGACAUGUG   1846 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023086M24, full insert sequence	NA	coding protein	psRNATarget
XM_015757978.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   *||*|||*||||||||||||= targets:1148   CGCGUUUAUCACUGACAUGUG   1168 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group bifunctional epoxide hydrolase 2 (LOC9267999), transcript variant X1, mRNA	bifunctional epoxide hydrolase 2(LOC9267999)	coding protein	psRNATarget
XM_015757979.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   *||*|||*||||||||||||= targets:1140   CGCGUUUAUCACUGACAUGUG   1160 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group bifunctional epoxide hydrolase 2 (LOC9267999), transcript variant X2, mRNA	bifunctional epoxide hydrolase 2(LOC9267999)	coding protein	psRNATarget
XM_015757980.1	ncRNA:21   ACGGAAACAGUGACUGUACAU   1   *||*|||*||||||||||||= targets:1136   CGCGUUUAUCACUGACAUGUG   1156 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group bifunctional epoxide hydrolase 2 (LOC9267999), transcript variant X3, mRNA	bifunctional epoxide hydrolase 2(LOC9267999)	coding protein	psRNATarget

Reference

1	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).