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BaseInfo

ncRNA ID novel_zma_miR168
Species Zea mays
Class miRNA
Genome position Chr3:174988589-174988769 [+]
Reference genome RefGen_v4
Source SRR1583943;SRR2647388;SRR2647391
Length 24
Mature sequence(if miRNA) 158 - CCUCUUCAUCUGUGAGUUCUUCAC - 181
Stem-loop(if miRNA) --                                                                                       A
  GAAGAACUCACAGAUGAAGAGGUUAUAGAGUCUGCACAUGUAGAGCAAGUGCAUCUUGCUUAGCUCUCGCCCAGUCCUUCAAGUAAG G
  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| C
  CUUCUUGAGUGUCUACUUCUCCAAUAUCUCAGACGUGUACAUCUCGUUCACGUAGAACGAAUCGAGAGCGGGUCAGGAAGUUCAUUC C
CA                                                                                       U
Stem-loop sequence GAAGAACUCACAGAUGAAGAGGUUAUAGAGUCUGCACAUGUAGAGCAAGUGCAUCUUGCUUAGCUCUCGCCCAGUCCUUCAAGUAAGAGCCUCUUACUUGAAGGACUGGGCGAGAGCUAAGCAAGAUGCACUUGCUCUACAUGUGCAGACUCUAUAACCUCUUCAUCUGUGAGUUCUUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ069468.1
ncRNA:24   CACUUCUUGAGUGUCUACUUCUCC   1
  **|||||||||||||||||||=|*
targets:674   CGGAAGAACUCACAGAUGAAGGGA   697

2.5 TSA: Zea mays contig05104, mRNA sequence NA coding protein psRNATarget