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BaseInfo

ncRNA ID	novel_zma_miR167
Species	Zea mays
Class	miRNA
Genome position	Chr4:13308409-13308530 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089711;SRR2287159;SRR2287160;SRR2089701
Length	24
Mature sequence(if miRNA)	1 - AUAAAUUUUGAUGAGCUGGAAUGA - 24
Stem-loop(if miRNA)	--    AU      G           A      UUCAU     -AAA       CAU       AUAA  UUUGAU AGCUGGAAUGA UCCGGG     UCCUG    AAGCGAA   GCCCU   ||||  |||||| ||||||||||| ||||||     |||||    |||||||   ||||U   UAUU  AAACUA UCGACCUUGCU AGGCCC     AGGAU    UUUGCUU   CGGGA UA    CU      A           A      UACUU     CGCG       AUC
Stem-loop sequence	AUAAAUUUUGAUGAGCUGGAAUGAAUCCGGGUUCAUUCCUGAAAAAGCGAACAUGCCCUUAGGGCCUAUUCGUUUGCGCUAGGAUUCAUCCCGGAAUCGUUCCAGCUAAUCAAAUCUUAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547002.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:585   UUAUUCCAGCUCAUUAAAAUUUAU   608 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020547001.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:585   UUAUUCCAGCUCAUUAAAAUUUAU   608 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547003.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:585   UUAUUCCAGCUCAUUAAAAUUUAU   608 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547005.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:585   UUAUUCCAGCUCAUUAAAAUUUAU   608 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020547012.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:585   UUAUUCCAGCUCAUUAAAAUUUAU   608 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X15, mRNA	NA	coding protein	psRNATarget
XM_020547004.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:585   UUAUUCCAGCUCAUUAAAAUUUAU   608 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020547006.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:585   UUAUUCCAGCUCAUUAAAAUUUAU   608 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020547015.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:585   UUAUUCCAGCUCAUUAAAAUUUAU   608 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X18, mRNA	NA	coding protein	psRNATarget
XM_020546998.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:586   UUAUUCCAGCUCAUUAAAAUUUAU   609 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547000.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:586   UUAUUCCAGCUCAUUAAAAUUUAU   609 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546999.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||=||||||||| targets:586   UUAUUCCAGCUCAUUAAAAUUUAU   609 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551773.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:2132   UCAUUCCAGCUCAUCAAAAUCUAU   2155 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance protein RGA1 (LOC109945454), mRNA	NA	coding protein	psRNATarget
EU951433.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:1257   UCAUUCCAGCUCAUCAAAAUAUAU   1280 Target Full Sequence	1.5	Zea mays clone 701850 mRNA sequence	NA	coding protein	psRNATarget
BT063869.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |||||||||||*|||||||||||| targets:857   UCAUUCCAGCUAAUCAAAAUUUAU   880 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0114G15 mRNA, complete cds	NA	coding protein	psRNATarget
AY108857.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:850   UCAUUCCAGCUCAUCAAAAUCUAU   873 Target Full Sequence	1.5	Zea mays PCO060055 mRNA sequence	NA	coding protein	psRNATarget
JB163604.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:119   UCAUUCCAGCUCAUCAAAAUCUAU   142 Target Full Sequence	1.5	Sequence 1268 from Patent EP2559767	NA	coding protein	psRNATarget
JB163506.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:119   UCAUUCCAGCUCAUCAAAAUCUAU   142 Target Full Sequence	1.5	Sequence 1170 from Patent EP2559767	NA	coding protein	psRNATarget
HI403143.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:119   UCAUUCCAGCUCAUCAAAAUCUAU   142 Target Full Sequence	1.5	Sequence 1268 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235273.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:119   UCAUUCCAGCUCAUCAAAAUCUAU   142 Target Full Sequence	1.5	Sequence 1268 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235175.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:119   UCAUUCCAGCUCAUCAAAAUCUAU   142 Target Full Sequence	1.5	Sequence 1170 from Patent EP2985353	NA	coding protein	psRNATarget
HI403045.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:119   UCAUUCCAGCUCAUCAAAAUCUAU   142 Target Full Sequence	1.5	Sequence 1170 from Patent EP2074227	NA	coding protein	psRNATarget
HI407312.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:49   UCAUUCCAGCUCAUCAAAAUCUAU   72 Target Full Sequence	1.5	Sequence 5437 from Patent EP2074227	NA	coding protein	psRNATarget
JB167773.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:49   UCAUUCCAGCUCAUCAAAAUCUAU   72 Target Full Sequence	1.5	Sequence 5437 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239442.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:49   UCAUUCCAGCUCAUCAAAAUCUAU   72 Target Full Sequence	1.5	Sequence 5437 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235043.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:37   UCAUUCCAGCUCAUCAAAAUCUAU   60 Target Full Sequence	1.5	Sequence 1038 from Patent EP2985353	NA	coding protein	psRNATarget
HI403022.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:37   UCAUUCCAGCUCAUCAAAAUCUAU   60 Target Full Sequence	1.5	Sequence 1147 from Patent EP2074227	NA	coding protein	psRNATarget
JB163483.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:37   UCAUUCCAGCUCAUCAAAAUCUAU   60 Target Full Sequence	1.5	Sequence 1147 from Patent EP2559767	NA	coding protein	psRNATarget
JB163374.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:37   UCAUUCCAGCUCAUCAAAAUCUAU   60 Target Full Sequence	1.5	Sequence 1038 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235152.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:37   UCAUUCCAGCUCAUCAAAAUCUAU   60 Target Full Sequence	1.5	Sequence 1147 from Patent EP2985353	NA	coding protein	psRNATarget
HI402913.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:37   UCAUUCCAGCUCAUCAAAAUCUAU   60 Target Full Sequence	1.5	Sequence 1038 from Patent EP2074227	NA	coding protein	psRNATarget
HI406047.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:36   UCAUUCCAGCUCAUCAAAAUAUAU   59 Target Full Sequence	1.5	Sequence 4172 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238177.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:36   UCAUUCCAGCUCAUCAAAAUAUAU   59 Target Full Sequence	1.5	Sequence 4172 from Patent EP2985353	NA	coding protein	psRNATarget
JB166508.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||||||||||||||||*||| targets:36   UCAUUCCAGCUCAUCAAAAUAUAU   59 Target Full Sequence	1.5	Sequence 4172 from Patent EP2559767	NA	coding protein	psRNATarget
BT060652.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=|||||*||||||||||||||| targets:2157   UCGUUCCAACUCAUCAAAAUUUAU   2180 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0028N09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658753.2	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||||||||*||| targets:1835   UUAUUCCAGCUCAUCAAAAUCUAU   1858 Target Full Sequence	1.5	PREDICTED: Zea mays probable carboxylesterase 16 (LOC103636397), mRNA	NA	coding protein	psRNATarget
BT035415.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||=|||||||||||||*||| targets:1391   UCAUUCUAGCUCAUCAAAAUCUAU   1414 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138362.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||||||=|||||||||||||*||| targets:1391   UCAUUCUAGCUCAUCAAAAUCUAU   1414 Target Full Sequence	2.5	Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA	NA	coding protein	psRNATarget
EU956338.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||||||||*||| targets:1105   UUAUUCCAGCUCAUCAAAAUCUAU   1128 Target Full Sequence	1.5	Zea mays clone 1560970 dehydration-responsive element-binding protein 1B mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154241.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=||||||||||||||||||*||| targets:1105   UUAUUCCAGCUCAUCAAAAUCUAU   1128 Target Full Sequence	1.5	Zea mays dehydration-responsive element-binding protein 1B (LOC100281323), mRNA	NA	coding protein	psRNATarget
XM_008646954.2	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=|||||||||||||||||*||| targets:533   UCGUUCCAGCUCAUCAAAAUCUAU   556 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103626534 (LOC103626534), mRNA	NA	coding protein	psRNATarget
HI405964.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=||||||||*|||||||||||| targets:44   UCGUUCCAGCUAAUCAAAAUUUAU   67 Target Full Sequence	1.5	Sequence 4089 from Patent EP2074227	NA	coding protein	psRNATarget
JB166425.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=||||||||*|||||||||||| targets:44   UCGUUCCAGCUAAUCAAAAUUUAU   67 Target Full Sequence	1.5	Sequence 4089 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238094.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=||||||||*|||||||||||| targets:44   UCGUUCCAGCUAAUCAAAAUUUAU   67 Target Full Sequence	1.5	Sequence 4089 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008658778.2	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=||=||||||||||||||*||| targets:2593   UCGUUUCAGCUCAUCAAAAUCUAU   2616 Target Full Sequence	2.5	PREDICTED: Zea mays putative clathrin assembly protein (LOC103636426), mRNA	NA	coding protein	psRNATarget
EZ095711.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=||||=|||*|||||||||||| targets:75   UCGUUCCGGCUAAUCAAAAUUUAU   98 Target Full Sequence	2.5	TSA: Zea mays contig31364, mRNA sequence	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=|||||*||*|||||||||||| targets:6469   UCGUUCCAACUAAUCAAAAUUUAU   6492 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654032.2	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   ||=|||||*||*|||||||||||| targets:954   UCGUUCCAACUAAUCAAAAUUUAU   977 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X5, mRNA	NA	coding protein	psRNATarget
HI406129.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=|||||*||||||||||||*||| targets:17   UUAUUCCUGCUCAUCAAAAUCUAU   40 Target Full Sequence	2.5	Sequence 4254 from Patent EP2074227	NA	coding protein	psRNATarget
JB166590.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=|||||*||||||||||||*||| targets:17   UUAUUCCUGCUCAUCAAAAUCUAU   40 Target Full Sequence	2.5	Sequence 4254 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238259.1	ncRNA:24   AGUAAGGUCGAGUAGUUUUAAAUA   1   |=|||||*||||||||||||*||| targets:17   UUAUUCCUGCUCAUCAAAAUCUAU   40 Target Full Sequence	2.5	Sequence 4254 from Patent EP2985353	NA	coding protein	psRNATarget