Search result

BaseInfo

ncRNA ID	novel_zma_miR166
Species	Zea mays
Class	miRNA
Genome position	Chr10:7014381-7014443 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089714;SRR2089715;SRR2287160;SRR2089704;SRR2089707
Length	24
Mature sequence(if miRNA)	40 - GAAAACCGCCUGUAGAAAUGGCCU - 63
Stem-loop(if miRNA)	--  A      CU         G  -     A   GA AACCGC  GUAGAAAUG CC UCCAC G   || ||||||  ||||||||| || ||||| U   CU UUGGCG  CAUCUUUAC GG AGGUG U AU  C      AU         -  C     U
Stem-loop sequence	GAAAACCGCCUGUAGAAAUGGCCUCCACAGUUUGUGGACGGCAUUUCUACUAGCGGUUCUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943186.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   **||=|||||||||||||||||*= targets:1918   UUGCUAUUUCUACAGGCGGUUUCU   1941 Target Full Sequence	2.5	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
LQ235215.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||||||||||| targets:35   UGG--AUUUUUACAGGCGGUUUUC   56 Target Full Sequence	1.0	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget
HI403085.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||||||||||| targets:35   UGG--AUUUUUACAGGCGGUUUUC   56 Target Full Sequence	1.0	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
JB163546.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||||||||||| targets:35   UGG--AUUUUUACAGGCGGUUUUC   56 Target Full Sequence	1.0	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
HI403059.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||*|||||||| targets:76   UGG--AUUUUUACAGACGGUUUUC   97 Target Full Sequence	2.5	Sequence 1184 from Patent EP2074227	NA	coding protein	psRNATarget
JB163520.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||*|||||||| targets:76   UGG--AUUUUUACAGACGGUUUUC   97 Target Full Sequence	2.5	Sequence 1184 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235189.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   *||--||||=|||||*|||||||| targets:76   UGG--AUUUUUACAGACGGUUUUC   97 Target Full Sequence	2.5	Sequence 1184 from Patent EP2985353	NA	coding protein	psRNATarget
EU944427.1	ncRNA:24   UCCGGUAAAGAUGUCCGCCAAAAG   1   |**=*||||||||*|||||||||= targets:589   AAUUGAUUUCUACUGGCGGUUUUU   612 Target Full Sequence	2.5	Zea mays clone 218366 mRNA sequence	NA	coding protein	psRNATarget