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BaseInfo

ncRNA ID	novel_zma_miR160
Species	Zea mays
Class	miRNA
Genome position	Chr4:136949233-136949294 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089711;SRR2089712;SRR2089714;SRR2287163;SRR5451005;SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AGGAUUGGAGGGGAUUGAGGGGAA - 24
Stem-loop(if miRNA)	--                      A    AA   AGGAUUGGAGGGGAUUGAGGGG AAAU  A   |||||||||||||||||||||| ||||   UCCUAACCUCCCCUAACUCCCC UUUA  C CC                      C    AU
Stem-loop sequence	AGGAUUGGAGGGGAUUGAGGGGAAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403355.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |||=|||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |||=|||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |||=|||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   ||=||||=|||||||||||||||| targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |*|||||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |*|||||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |*|||||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||||||||||||| targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	0.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||||||||||||| targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	0.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AAGGG-GAGUUAGGGGAGGUUAGGA   1   |||=|-||||||||||||||||||| targets:1462   UUCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349063.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUU-AGGA   1   ||=|=|||||||||||||||-|||| targets:1644   UUUCUCUCAAUCCCCUCCAACUCCU   1668 Target Full Sequence	3.0	Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA	NA	coding protein	psRNATarget
BT064254.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUU-AGGA   1   ||=|=|||||||||||||||-|||| targets:1644   UUUCUCUCAAUCCCCUCCAACUCCU   1668 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds	NA	coding protein	psRNATarget
BT067571.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUU-AGGA   1   ||=|=|||||||||||||||-|||| targets:1631   UUUCUCUCAAUCCCCUCCAACUCCU   1655 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649902.2	ncRNA:24   AAGGGGAGUUAGGGGAGGUU-AGGA   1   ||=|=|||||||||||||||-|||| targets:1674   UUUCUCUCAAUCCCCUCCAACUCCU   1698 Target Full Sequence	3.0	PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AAGGG-GAGUUAGGGGAGGUUAGGA   1   |||=|-||||||||||||||||||* targets:69   UUCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	3.0	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AAGGG-GAGUUAGGGGAGGUUAGGA   1   |||=|-||||||||||||||||||* targets:69   UUCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	3.0	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AAGGG-GAGUUAGGGGAGGUUAGGA   1   |||=|-||||||||||||||||||* targets:69   UUCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	3.0	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AAGG-GGAGUUAGGGGAGGUUAGGA   1   ||||-|||||||||=|||||||||* targets:2428   UUCCACCUCAAUCCUCUCCAAUCCC   2452 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   |*||||||||||||||||=||||* targets:3175   UCCCCCUCAAUCCCCUCCGAUCCC   3198 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:24   AA---GGGGAGUUAGGGGAGGUUAGGA   1   ||---|||||||||||||||||=|||* targets:7   UUAGCCCCCUCAAUCCCCUCCAGUCCC   33 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   **|||||||||||||||=|||||* targets:1067   AGCCCCUCAAUCCCCUCUAAUCCC   1090 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AAG-GGGAGUUAGGGGAGGUUAGGA   1   *||-|||||||||||||=||||||* targets:83   AUCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AAG-GGGAGUUAGGGGAGGUUAGGA   1   *||-|||||||||||||=||||||* targets:83   AUCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AAG-GGGAGUUAGGGGAGGUUAGGA   1   *||-|||||||||||||=||||||* targets:83   AUCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008666284.2	ncRNA:24   AAGG-GGAGUUAGGGGAGGUUAGGA   1   ||||-|=||||||||*||||||||| targets:3280   UUCCACUUCAAUCCCAUCCAAUCCU   3304 Target Full Sequence	2.5	PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666283.2	ncRNA:24   AAGG-GGAGUUAGGGGAGGUUAGGA   1   ||||-|=||||||||*||||||||| targets:3363   UUCCACUUCAAUCCCAUCCAAUCCU   3387 Target Full Sequence	2.5	PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   AAG----GGGAGUUAGGGGAGGUUAGGA   1   ||=----|==|||||||||||||||*|| targets:1323   UUUAGCACUUUCAAUCCCCUCCAAUACU   1350 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_020546797.1	ncRNA:24   AAGG-GGAGUUAGGGGAGGUUAGGA   1   ||||-|||=||*||||||||||||* targets:5205   UUCCACCUUAACCCCCUCCAAUCCC   5229 Target Full Sequence	3.0	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666766.2	ncRNA:24   AAGG-GGAGUUAGGGGAGGUUAGGA   1   ||||-|||=||*||||||||||||* targets:5339   UUCCACCUUAACCCCCUCCAAUCCC   5363 Target Full Sequence	3.0	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY108800.1	ncRNA:24   AAGGGGAGUUAGGGGAGGUUAGGA   1   **||=||||||||||||||*|||* targets:782   GCCCUCUCAAUCCCCUCCAUUCCA   805 Target Full Sequence	2.5	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget