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BaseInfo

ncRNA ID	novel_zma_miR159
Species	Zea mays
Class	miRNA
Genome position	Chr10:9156730-9156948 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089715
Length	24
Mature sequence(if miRNA)	196 - AAUAGACUACGUUUAGAGACACUC - 219
Stem-loop(if miRNA)	--               G                                      C                           C               -A    A AA   AAUAGACUACGUUUA AGACACUCCAUUGUACAAUAGAGUCUCUUAGUUGUCUC UGUGCUUGGAGAACCGUUUUGGUGUCU UCCACUGUACAUGCC  AGUA C  C   ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||| |   UUAUCUGAUGCAAAU UCUGUGAGGUAACAUGUUAUCUCAGAGAAUCAACAGAG ACACGAACCUCUUGGCAAAACCACAGA AGGUGACAUGUACGG  UUAU G  A AA               A                                      A                           A               GA    C CU
Stem-loop sequence	AAUAGACUACGUUUAGAGACACUCCAUUGUACAAUAGAGUCUCUUAGUUGUCUCCUGUGCUUGGAGAACCGUUUUGGUGUCUCUCCACUGUACAUGCCAAGUAACAACAUCGCUAUUAGGGCAUGUACAGUGGAAAGACACCAAAACGGUUCUCCAAGCACAAGAGACAACUAAGAGACUCUAUUGUACAAUGGAGUGUCUAUAAACGUAGUCUAUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055639.1	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   ||||||||*||||||||||||||| targets:752   GAGUGUCUAUAAACGUAGUCUAUU   775 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0090K01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153068.1	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   ||||||||*||||||||||||||| targets:752   GAGUGUCUAUAAACGUAGUCUAUU   775 Target Full Sequence	1.0	Zea mays uncharacterized LOC100280135 (LOC100280135), mRNA	NA	coding protein	psRNATarget
EU941079.1	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   ||||||||*||||||||||||||| targets:868   GAGUGUCUAUAAACGUAGUCUAUU   891 Target Full Sequence	1.0	Zea mays clone 1285899 mRNA sequence	NA	coding protein	psRNATarget
XM_020551598.1	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   ||||||||*||||||||||||||| targets:7   GAGUGUCUAUAAACGUAGUCUAUU   30 Target Full Sequence	1.0	PREDICTED: Zea mays calmodulin-related protein (LOC100285551), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546921.1	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   ||||||||*||||||||||||||| targets:2225   GAGUGUCUAUAAACGUAGUCUAUU   2248 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943544 (LOC109943544), mRNA	NA	coding protein	psRNATarget
XM_008683325.2	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   ||||||||*||||||||||=|||| targets:3160   GAGUGUCUAUAAACGUAGUUUAUU   3183 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100304433), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020537577.1	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   ||||||||*||||||||||=|||| targets:3247   GAGUGUCUAUAAACGUAGUUUAUU   3270 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100304433), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008683311.2	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   ||||||||*||||||||||=|||| targets:3311   GAGUGUCUAUAAACGUAGUUUAUU   3334 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100304433), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU971588.1	ncRNA:24   CUCACAGAGAUUUGCAUCAGAUAA   1   *|||||||*||||||||||||||| targets:1490   AAGUGUCUAUAAACGUAGUCUAUU   1513 Target Full Sequence	1.0	Zea mays clone 367657 nicotianamine synthase 3 mRNA, complete cds	NA	coding protein	psRNATarget