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BaseInfo

ncRNA ID novel_zma_miR154
Species Zea mays
Class miRNA
Genome position Chr3:9136762-9136869 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089706
Length 24
Mature sequence(if miRNA) 1 - UCUAGUAAUGAAAGGGAUUGGAGU - 24
Stem-loop(if miRNA) --       AU    G  A         -AU   GAUGCAUUAUGAGAGUUUUU
  UCUAGUA  GAAA GG UUGGAGUGG   UAA                    G
  |||||||  |||| || |||||||||   |||                    A
  AGAUCAU  CUUU CC AACCUCACU   CUC                    U
UG       AU    A  A         AAC   UCACAUAUUUAGGAAUUAUC
Stem-loop sequence UCUAGUAAUGAAAGGGAUUGGAGUGGAUUAAGAUGCAUUAUGAGAGUUUUUGAUCUAUUAAGGAUUUAUACACUCUCCAAUCACUCCAAACCAUUUCUAUACUAGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ056559.1
ncRNA:24   UGAGGUUAGGGAAAGUAAUGAUCU   1
  |||||||||*|*||||||||||||
targets:4   ACUCCAAUCGCAUUCAUUACUAGA   27

2.5 TSA: Zea mays contig57681, mRNA sequence NA coding protein psRNATarget