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BaseInfo

ncRNA ID novel_zma_miR152
Species Zea mays
Class miRNA
Genome position Chr3:7584242-7584291 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089700;SRR2089701;SRR2089702;SRR2089704;SRR2089705
Length 22
Mature sequence(if miRNA) 1 - GUGAGAUUUCAGAGGACGGGUU - 22
Stem-loop(if miRNA) --      UUU  -   -G     UUC
  GUGAGA   CA GAG  ACGGG   A
  ||||||   || |||  |||||
  UACUCU   GU CUC  UGCCC   U
GC      --C  A   GA     UUC
Stem-loop sequence GUGAGAUUUCAGAGGACGGGUUCAUCUUCCCGUAGCUCAUGCUCUCAUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542022.1
ncRNA:22   UUGGGCAGGAGACUUUAGAGUG   1
  |||||||=||||||=|||||||
targets:19   AACCCGUUCUCUGAGAUCUCAC   40

2.5 PREDICTED: Zea mays uncharacterized LOC109941350 (LOC109941350), mRNA NA coding protein psRNATarget
EZ055668.1
ncRNA:22   UUGGGCAGGAGACUUUAGAGUG   1
  *|=|||*||||||||||||*||
targets:59   UAUCCGGCCUCUGAAAUCUGAC   80

2.5 TSA: Zea mays contig56790, mRNA sequence NA coding protein psRNATarget